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This page was generated on 2024-04-17 08:30:07 -0400 (Wed, 17 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4677
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/45HostnameOS / ArchINSTALLBUILDCHECK
AHPubMedDbs 0.99.8  (landing page)
Koki Tsuyuzaki
Snapshot Date: 2024-04-17 06:00:01 -0400 (Wed, 17 Apr 2024)
git_url: https://git.bioconductor.org/packages/AHPubMedDbs
git_branch: RELEASE_3_18
git_last_commit: f43d98f
git_last_commit_date: 2021-04-21 00:14:17 -0400 (Wed, 21 Apr 2021)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  NO, version to propagate (0.99.8) is lower than published version (1.7.0)

CHECK results for AHPubMedDbs on nebbiolo2


To the developers/maintainers of the AHPubMedDbs package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AHPubMedDbs
Version: 0.99.8
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:AHPubMedDbs.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings AHPubMedDbs_0.99.8.tar.gz
StartedAt: 2024-04-17 06:33:32 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 06:34:05 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 33.3 seconds
RetCode: 0
Status:   OK  
CheckDir: AHPubMedDbs.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:AHPubMedDbs.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings AHPubMedDbs_0.99.8.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-annotation/meat/AHPubMedDbs.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘AHPubMedDbs/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AHPubMedDbs’ version ‘0.99.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AHPubMedDbs’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘pubmed.Rmd’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

AHPubMedDbs.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL AHPubMedDbs
###
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* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘AHPubMedDbs’ ...
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AHPubMedDbs)

Tests output


Example timings

AHPubMedDbs.Rcheck/AHPubMedDbs-Ex.timings

nameusersystemelapsed
AHPubMedDbs-package000