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This page was generated on 2024-04-18 11:32:21 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2236/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsn 3.70.0  (landing page)
Wolfgang Huber
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/vsn
git_branch: RELEASE_3_18
git_last_commit: a0a0c6d
git_last_commit_date: 2023-10-24 09:31:53 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    NA  

INSTALL results for vsn on kjohnson1


To the developers/maintainers of the vsn package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: vsn
Version: 3.70.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL vsn
StartedAt: 2024-04-16 10:32:36 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 10:32:48 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 11.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL vsn
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘vsn’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c vsn.c -o vsn.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c vsn2.c -o vsn2.o
vsn2.c:300:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  if(!isInteger(Scalib)| (LENGTH(Scalib)!=1)) 
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                       ||
vsn2.c:300:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o vsn.so init.o vsn.o vsn2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-vsn/00new/vsn/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vsn)