Back to Mac ARM64 build report for BioC 3.18
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2024-04-18 11:32:20 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2129/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidySingleCellExperiment 1.12.0  (landing page)
Stefano Mangiola
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/tidySingleCellExperiment
git_branch: RELEASE_3_18
git_last_commit: 9bea2c1
git_last_commit_date: 2023-10-24 11:27:42 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for tidySingleCellExperiment on kjohnson1


To the developers/maintainers of the tidySingleCellExperiment package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: tidySingleCellExperiment
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidySingleCellExperiment
StartedAt: 2024-04-17 04:02:43 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 04:03:57 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 73.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidySingleCellExperiment
###
##############################################################################
##############################################################################


* checking for file ‘tidySingleCellExperiment/DESCRIPTION’ ... OK
* preparing ‘tidySingleCellExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
* creating vignettes ... ERROR
--- re-building ‘introduction.Rmd’ using rmarkdown
2024-04-17 04:03:53.884 R[45899:450589097] XType: Using static font registry.

Quitting from lines 198-210 [preprocess] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction.Rmd’

Error: Vignette re-building failed.
Execution halted