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This page was generated on 2024-03-28 11:32:30 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1876/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
schex 1.16.1  (landing page)
Saskia Freytag
Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/schex
git_branch: RELEASE_3_18
git_last_commit: f3bdf54
git_last_commit_date: 2024-01-30 19:40:33 -0400 (Tue, 30 Jan 2024)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for schex on kjohnson1


To the developers/maintainers of the schex package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: schex
Version: 1.16.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data schex
StartedAt: 2024-03-27 01:46:33 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 01:48:15 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 101.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data schex
###
##############################################################################
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* checking for file ‘schex/DESCRIPTION’ ... OK
* preparing ‘schex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Seurat_to_SCE.Rmd’ using rmarkdown
2024-03-27 01:47:27.593 R[16943:394547790] XType: Using static font registry.
--- finished re-building ‘Seurat_to_SCE.Rmd’

--- re-building ‘using_schex.Rmd’ using rmarkdown

Quitting from lines 133-139 [dim-red] (using_schex.Rmd)
Error: processing vignette 'using_schex.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘using_schex.Rmd’

SUMMARY: processing the following file failed:
  ‘using_schex.Rmd’

Error: Vignette re-building failed.
Execution halted