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This page was generated on 2024-04-18 11:32:18 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 1881/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scMerge 1.18.0  (landing page)
Yingxin Lin
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/scMerge
git_branch: RELEASE_3_18
git_last_commit: 8b9a2dc
git_last_commit_date: 2023-10-24 11:13:27 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for scMerge on kjohnson1


To the developers/maintainers of the scMerge package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scMerge
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scMerge
StartedAt: 2024-04-17 02:07:37 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 02:09:32 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 114.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scMerge
###
##############################################################################
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* checking for file ‘scMerge/DESCRIPTION’ ... OK
* preparing ‘scMerge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘scMerge.Rmd’ using rmarkdown
2024-04-17 02:08:55.682 R[90168:450426485] XType: Using static font registry.
--- finished re-building ‘scMerge.Rmd’

--- re-building ‘scMerge2.Rmd’ using rmarkdown

Quitting from lines 82-92 [unnamed-chunk-2] (scMerge2.Rmd)
Error: processing vignette 'scMerge2.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  1 unevaluated and other errors
  first remote error:
Error in (function (A, nv = 5, nu = nv, maxit = 1000, work = nv + 7, reorth = TRUE, : function 'as_cholmod_sparse' not provided by package 'Matrix'

--- failed re-building ‘scMerge2.Rmd’

SUMMARY: processing the following file failed:
  ‘scMerge2.Rmd’

Error: Vignette re-building failed.
Execution halted