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This page was generated on 2024-04-18 11:32:18 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1866/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scDblFinder 1.16.0  (landing page)
Pierre-Luc Germain
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/scDblFinder
git_branch: RELEASE_3_18
git_last_commit: eb6af9b
git_last_commit_date: 2023-10-24 11:17:39 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for scDblFinder on kjohnson1


To the developers/maintainers of the scDblFinder package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scDblFinder
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder
StartedAt: 2024-04-17 01:54:50 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 01:56:52 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 121.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder
###
##############################################################################
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* checking for file ‘scDblFinder/DESCRIPTION’ ... OK
* preparing ‘scDblFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘computeDoubletDensity.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection

Quitting from lines 39-50 [unnamed-chunk-3] (computeDoubletDensity.Rmd)
Error: processing vignette 'computeDoubletDensity.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘computeDoubletDensity.Rmd’

--- re-building ‘findDoubletClusters.Rmd’ using rmarkdown

Quitting from lines 39-54 [unnamed-chunk-3] (findDoubletClusters.Rmd)
Error: processing vignette 'findDoubletClusters.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘findDoubletClusters.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’

--- re-building ‘recoverDoublets.Rmd’ using rmarkdown
--- finished re-building ‘recoverDoublets.Rmd’

--- re-building ‘scATAC.Rmd’ using rmarkdown

Quitting from lines 41-46 [unnamed-chunk-2] (scATAC.Rmd)
Error: processing vignette 'scATAC.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘scATAC.Rmd’

--- re-building ‘scDblFinder.Rmd’ using rmarkdown

Quitting from lines 49-55 [unnamed-chunk-3] (scDblFinder.Rmd)
Error: processing vignette 'scDblFinder.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘scDblFinder.Rmd’

SUMMARY: processing the following files failed:
  ‘computeDoubletDensity.Rmd’ ‘findDoubletClusters.Rmd’ ‘scATAC.Rmd’
  ‘scDblFinder.Rmd’

Error: Vignette re-building failed.
Execution halted