Tim Daniel Rose
| Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/mosbi |
| git_branch: RELEASE_3_18 |
| git_last_commit: adf6bad |
| git_last_commit_date: 2023-10-24 11:37:53 -0400 (Tue, 24 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-03-28 11:32:25 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1307/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mosbi 1.8.0 (landing page) Tim Daniel Rose
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | |||||||
|
To the developers/maintainers of the mosbi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mosbi |
| Version: 1.8.0 |
| Command: _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.8.0.tar.gz |
| StartedAt: 2024-03-27 19:48:13 -0400 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 19:48:52 -0400 (Wed, 27 Mar 2024) |
| EllapsedTime: 39.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: mosbi.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### _R_CHECK_FORCE_SUGGESTS_=0 /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mosbi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mosbi_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/mosbi.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mosbi/DESCRIPTION’ ... OK
* this is package ‘mosbi’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘runibic’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mosbi’ can be installed ... WARNING
Found the following significant warnings:
attr_graph.cpp:123:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
attribute_overlap.cpp:175:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
bicluster_methods.cpp:125:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
bicluster_methods.cpp:150:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
bicluster_methods.cpp:214:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
full_graph.cpp:111:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
misc.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
network_edge_strength.cpp:86:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/mosbi.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... OK
Not all R platforms support C++17
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘get_communities’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 5 NOTEs
See
‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/mosbi.Rcheck/00check.log’
for details.
mosbi.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mosbi
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘mosbi’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attr_graph.cpp -o attr_graph.o
attr_graph.cpp:123:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((rownames(m)!=R_NilValue)&(colnames(m)!=R_NilValue)){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
attr_graph.cpp:123:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attributeConnector.cpp -o attributeConnector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attribute_overlap.cpp -o attribute_overlap.o
attribute_overlap.cpp:175:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((rownames(occurance_m)!=R_NilValue)&(colnames(occurance_m)!=R_NilValue)){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
attribute_overlap.cpp:175:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bicluster_methods.cpp -o bicluster_methods.o
bicluster_methods.cpp:125:6: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
if((row1.length()>row2.length())|(col1.length()>col2.length())){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
||
bicluster_methods.cpp:125:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:130:18: warning: loop variable 'i' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
for(const int& i : row1){
^
bicluster_methods.cpp:130:7: note: use non-reference type 'int' to make construction explicit or type 'const typename storage_type<14>::type &' (aka 'const double &') to prevent copying
for(const int& i : row1){
^~~~~~~~~~~~~~
bicluster_methods.cpp:137:18: warning: loop variable 'j' of type 'const int &' binds to a temporary constructed from type 'typename storage_type<14>::type &' (aka 'double &') [-Wrange-loop-construct]
for(const int& j : col1){
^
bicluster_methods.cpp:137:7: note: use non-reference type 'int' to make construction explicit or type 'const typename storage_type<14>::type &' (aka 'const double &') to prevent copying
for(const int& j : col1){
^~~~~~~~~~~~~~
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((irow==row1.length())&(irow==row2.length())&
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((irow==row1.length())&(irow==row2.length())&
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:144:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((irow==row1.length())&(irow==row2.length())&
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
bicluster_methods.cpp:144:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:150:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((irow==row1.length())&(icol==col1.length())){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
bicluster_methods.cpp:150:6: note: cast one or both operands to int to silence this warning
bicluster_methods.cpp:214:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((!iinv(b, ereaseV))&(!iinv(b, identicalV))){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
bicluster_methods.cpp:214:8: note: cast one or both operands to int to silence this warning
8 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c boost_graph.cpp -o boost_graph.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c boost_write.cpp -o boost_write.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c distance_matrix.cpp -o distance_matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractBF.cpp -o extractBF.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractQUBIC2.cpp -o extractQUBIC2.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c full_graph.cpp -o full_graph.o
full_graph.cpp:111:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((rownames(m)!=R_NilValue)&(colnames(m)!=R_NilValue)){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
full_graph.cpp:111:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc.cpp -o misc.o
misc.cpp:20:12: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
return(!((colnames(m)==R_NilValue)|(rownames(m)==R_NilValue)));
~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
||
misc.cpp:20:12: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c network_edge_strength.cpp -o network_edge_strength.o
network_edge_strength.cpp:86:6: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
if((rownames(mat)!=R_NilValue)&(colnames(mat)!=R_NilValue)){
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&&
network_edge_strength.cpp:86:6: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sample_biclusters.cpp -o sample_biclusters.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/RcppParallel/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c write_matrix.cpp -o write_matrix.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mosbi.so RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-mosbi/00new/mosbi/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)
mosbi.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(mosbi)
Attaching package: 'mosbi'
The following object is masked from 'package:testthat':
has_names
>
> test_check("mosbi")
6 6
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
1.250 0.146 1.404
mosbi.Rcheck/mosbi-Ex.timings
| name | user | system | elapsed | |
| NoBFBiclusters | 0 | 0 | 0 | |
| algohistogram | 0.001 | 0.001 | 0.001 | |
| apply_threshold-bicluster_net-method | 0.001 | 0.000 | 0.000 | |
| apply_threshold-cooccurrence_net-method | 0 | 0 | 0 | |
| apply_threshold | 0.001 | 0.000 | 0.000 | |
| attr_overlap | 0.000 | 0.001 | 0.001 | |
| attributeConnector | 0 | 0 | 0 | |
| attribute_graph | 0 | 0 | 0 | |
| bicluster-class | 0.003 | 0.001 | 0.003 | |
| bicluster_heatmap-bicluster-matrix-method | 0.034 | 0.002 | 0.035 | |
| bicluster_heatmap | 0.006 | 0.001 | 0.007 | |
| bicluster_net-class | 0.002 | 0.000 | 0.002 | |
| bicluster_net_to_igraph-bicluster_net-method | 0 | 0 | 0 | |
| bicluster_net_to_igraph | 0.000 | 0.000 | 0.001 | |
| bicluster_network | 0 | 0 | 0 | |
| bicluster_to_matrix | 0.001 | 0.001 | 0.000 | |
| check_names | 0 | 0 | 0 | |
| clean_bicluster_list | 0.001 | 0.001 | 0.002 | |
| colhistogram | 0.000 | 0.000 | 0.001 | |
| cooccurrence_net-class | 0.001 | 0.001 | 0.002 | |
| cooccurrence_net_to_igraph-cooccurrence_net-method | 0 | 0 | 0 | |
| cooccurrence_net_to_igraph | 0 | 0 | 0 | |
| cpp_matrix_subsetting | 0.000 | 0.000 | 0.001 | |
| detect_elements | 0.001 | 0.001 | 0.001 | |
| dim-bicluster-method | 0.000 | 0.000 | 0.001 | |
| distance_matrix | 0.000 | 0.001 | 0.001 | |
| ensemble_biclusters | 0 | 0 | 0 | |
| feature_louvain_overlap | 0 | 0 | 0 | |
| feature_network | 0 | 0 | 0 | |
| filter_bicluster_size | 0.001 | 0.000 | 0.002 | |
| filter_biclusters | 0.001 | 0.000 | 0.002 | |
| filter_matrix | 0 | 0 | 0 | |
| filter_subsets | 0.001 | 0.001 | 0.001 | |
| full_graph | 0.001 | 0.000 | 0.001 | |
| getAkmbiclustClusters | 0 | 0 | 0 | |
| getBFCluster | 0 | 0 | 0 | |
| getBicAREbiclusters | 0.000 | 0.001 | 0.001 | |
| getBiclustClusters | 0 | 0 | 0 | |
| getBiclustpyClusters | 0 | 0 | 0 | |
| getFabiaClusters | 0.000 | 0.001 | 0.000 | |
| getIsaClusters | 0.000 | 0.000 | 0.001 | |
| getQUBIC2biclusters | 0 | 0 | 0 | |
| get_adjacency-bicluster_net-method | 0 | 0 | 0 | |
| get_adjacency | 0 | 0 | 0 | |
| get_algorithms | 0.000 | 0.001 | 0.000 | |
| get_bic_net_algorithms-bicluster_net-method | 0 | 0 | 0 | |
| get_bic_net_algorithms | 0 | 0 | 0 | |
| get_biclusters | 0.000 | 0.001 | 0.001 | |
| get_louvain_communities-bicluster_net-method | 0 | 0 | 0 | |
| get_louvain_communities-cooccurrence_net-method | 0 | 0 | 0 | |
| get_louvain_communities | 0.000 | 0.001 | 0.000 | |
| getallBFClusters | 0.000 | 0.000 | 0.001 | |
| has_names | 0.001 | 0.000 | 0.001 | |
| is_subset_or_identical | 0.001 | 0.000 | 0.001 | |
| mouse_data | 0.000 | 0.000 | 0.001 | |
| network_edge_strength | 0 | 0 | 0 | |
| network_edge_strength_float | 0 | 0 | 0 | |
| node_size | 0 | 0 | 0 | |
| occurance_matrix | 0.000 | 0.000 | 0.001 | |
| occurance_table | 0 | 0 | 0 | |
| p_overlap | 0 | 0 | 0 | |
| p_overlap_2d | 0.000 | 0.001 | 0.000 | |
| p_overlap_2d_higher | 0.000 | 0.000 | 0.001 | |
| p_overlap_higher | 0 | 0 | 0 | |
| plot-bicluster_net-missing-method | 0.000 | 0.001 | 0.000 | |
| plot-cooccurrence_net-missing-method | 0.001 | 0.000 | 0.000 | |
| plot_algo_network | 0.000 | 0.000 | 0.001 | |
| plot_piechart_bicluster_network | 0.000 | 0.001 | 0.000 | |
| randomize_matrix | 0.000 | 0.000 | 0.001 | |
| replace_threshold | 0.001 | 0.000 | 0.000 | |
| replace_values | 0 | 0 | 0 | |
| replace_values_float | 0.001 | 0.001 | 0.001 | |
| rowhistogram | 0.000 | 0.000 | 0.001 | |
| run_akmbiclust | 0 | 0 | 0 | |
| run_bimax | 0.001 | 0.000 | 0.000 | |
| run_cc | 0 | 0 | 0 | |
| run_fabia | 0 | 0 | 0 | |
| run_isa | 0 | 0 | 0 | |
| run_plaid | 0.000 | 0.001 | 0.000 | |
| run_qubic | 0 | 0 | 0 | |
| run_quest | 0.000 | 0.000 | 0.001 | |
| run_spectral | 0.000 | 0.001 | 0.000 | |
| run_unibic | 0.000 | 0.000 | 0.001 | |
| run_xmotifs | 0.000 | 0.001 | 0.001 | |
| sample_biclusters | 0 | 0 | 0 | |
| select_biclusters_from_bicluster_network-bicluster_net-list-method | 0 | 0 | 0 | |
| select_biclusters_from_bicluster_network | 0 | 0 | 0 | |
| set_bicluster_names | 0.002 | 0.000 | 0.002 | |
| similarity_matrix | 0.001 | 0.001 | 0.000 | |
| transpose_bicluster | 0.001 | 0.000 | 0.001 | |
| validate_bicluster | 0.000 | 0.000 | 0.001 | |
| write_graphml | 0.000 | 0.000 | 0.001 | |
| write_matrix | 0.000 | 0.000 | 0.001 | |
| zero_subsetting | 0.000 | 0.000 | 0.001 | |