Maria Jose Nueda
| Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/maSigPro |
| git_branch: RELEASE_3_18 |
| git_last_commit: 55ea81c |
| git_last_commit_date: 2023-10-24 09:35:43 -0400 (Tue, 24 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:13 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1151/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maSigPro 1.74.0 (landing page) Maria Jose Nueda
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the maSigPro package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maSigPro |
| Version: 1.74.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.74.0.tar.gz |
| StartedAt: 2024-04-17 18:17:06 -0400 (Wed, 17 Apr 2024) |
| EndedAt: 2024-04-17 18:19:43 -0400 (Wed, 17 Apr 2024) |
| EllapsedTime: 157.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maSigPro.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.74.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/maSigPro.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.74.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PodiumChange 11.826 0.295 12.209
IsoPlot 11.734 0.359 12.102
seeDS 11.788 0.270 12.112
getDS 11.633 0.253 11.974
IsoModel 11.316 0.299 11.732
getDSPatterns 11.236 0.346 11.667
ISOdata 11.224 0.300 11.617
tableDS 11.263 0.252 11.731
ISOdesign 10.723 0.276 11.063
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maSigPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘maSigPro’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maSigPro)
maSigPro.Rcheck/maSigPro-Ex.timings
| name | user | system | elapsed | |
| ISOdata | 11.224 | 0.300 | 11.617 | |
| ISOdesign | 10.723 | 0.276 | 11.063 | |
| IsoModel | 11.316 | 0.299 | 11.732 | |
| IsoPlot | 11.734 | 0.359 | 12.102 | |
| NBdata | 0.001 | 0.002 | 0.003 | |
| NBdesign | 0.001 | 0.001 | 0.002 | |
| PlotGroups | 0.031 | 0.002 | 0.033 | |
| PlotProfiles | 0.005 | 0.001 | 0.008 | |
| PodiumChange | 11.826 | 0.295 | 12.209 | |
| T.fit | 4.469 | 0.041 | 4.515 | |
| average.rows | 0.002 | 0.001 | 0.002 | |
| data.abiotic | 0.006 | 0.002 | 0.008 | |
| edesign.abiotic | 0.002 | 0.002 | 0.004 | |
| edesignCT | 0.001 | 0.001 | 0.002 | |
| edesignDR | 0.001 | 0.001 | 0.002 | |
| get.siggenes | 2.274 | 0.020 | 2.294 | |
| getDS | 11.633 | 0.253 | 11.974 | |
| getDSPatterns | 11.236 | 0.346 | 11.667 | |
| i.rank | 0.000 | 0.000 | 0.001 | |
| maSigProUsersGuide | 0.004 | 0.006 | 0.011 | |
| make.design.matrix | 0.004 | 0.008 | 0.014 | |
| p.vector | 1.530 | 0.023 | 1.556 | |
| position | 0.000 | 0.000 | 0.001 | |
| reg.coeffs | 0.001 | 0.000 | 0.001 | |
| see.genes | 0.532 | 0.026 | 0.559 | |
| seeDS | 11.788 | 0.270 | 12.112 | |
| stepback | 0.020 | 0.001 | 0.021 | |
| stepfor | 0.069 | 0.002 | 0.071 | |
| suma2Venn | 0.024 | 0.003 | 0.028 | |
| tableDS | 11.263 | 0.252 | 11.731 | |
| two.ways.stepback | 0.079 | 0.002 | 0.090 | |
| two.ways.stepfor | 0.085 | 0.002 | 0.087 | |