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This page was generated on 2024-03-28 11:32:20 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 735/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.48.0  (landing page)
Yongchao Ge
Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: RELEASE_3_18
git_last_commit: d503362
git_last_commit_date: 2023-10-24 09:50:23 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for flowPeaks on kjohnson1


To the developers/maintainers of the flowPeaks package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowPeaks
Version: 1.48.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowPeaks
StartedAt: 2024-03-26 10:01:43 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 10:01:57 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 14.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowPeaks
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c Rpack.cpp -o Rpack.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c Rregistrate.cpp -o Rregistrate.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp:803:5: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses]
        if(!triangulate & plot & !debug)
           ^            ~
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses after the '!' to evaluate the bitwise operator first
        if(!triangulate & plot & !debug)
           ^
            (                 )
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses around left hand side expression to silence this warning
        if(!triangulate & plot & !debug)
           ^
           (           )
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c flowPeaks.cpp -o flowPeaks.o
flowPeaks.cpp:279:13: warning: variable 'ilinedev' set but not used [-Wunused-but-set-variable]
        static int ilinedev=1;
                   ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c func_collect.cpp -o func_collect.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c kd_tree.cpp -o kd_tree.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c kmns.cpp -o kmns.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-flowPeaks/00new/flowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowPeaks)