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This page was generated on 2024-03-28 11:32:19 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 544/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
derfinder 1.36.0  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/derfinder
git_branch: RELEASE_3_18
git_last_commit: 9bc4cd5
git_last_commit_date: 2023-10-24 10:38:56 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for derfinder on kjohnson1


To the developers/maintainers of the derfinder package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: derfinder
Version: 1.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data derfinder
StartedAt: 2024-03-26 16:47:53 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 16:53:15 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 321.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data derfinder
###
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* checking for file ‘derfinder/DESCRIPTION’ ... OK
* preparing ‘derfinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘derfinder-quickstart.Rmd’ using rmarkdown
2024-03-26 16:49:23.815 R[32993:393369981] XType: Using static font registry.
Warning in `[[.bibentry`(bib, "derfinderHelper") :
  subscript out of bounds
Warning: The label(s) fig:firstfive1, fig:firstfive2, fig:firstfive3, fig:firstfive4, fig:firstfive5 not found
--- finished re-building ‘derfinder-quickstart.Rmd’

--- re-building ‘derfinder-users-guide.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /private/tmp/RtmplfbKrU/Rbuild80325726c415/derfinder/vignettes/analysisResults (probably via setwd()). It will be restored to /private/tmp/RtmplfbKrU/Rbuild80325726c415/derfinder/vignettes. See the Note section in ?knitr::knit
Warning in `[[.bibentry`(bib, "derfinderHelper") :
  subscript out of bounds
Error: processing vignette 'derfinder-users-guide.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘derfinder-users-guide.Rmd’

SUMMARY: processing the following file failed:
  ‘derfinder-users-guide.Rmd’

Error: Vignette re-building failed.
Execution halted