Back to Mac ARM64 build report for BioC 3.18
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-04-18 11:32:09 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 518/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
decoupleR 2.8.2  (landing page)
Pau Badia-i-Mompel
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/decoupleR
git_branch: RELEASE_3_18
git_last_commit: 6587d58
git_last_commit_date: 2024-02-20 07:44:13 -0400 (Tue, 20 Feb 2024)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    ERROR    ERROR  

BUILD BIN results for decoupleR on kjohnson1


To the developers/maintainers of the decoupleR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: decoupleR
Version: 2.8.2
Command: rm -rf decoupleR.buildbin-libdir && mkdir decoupleR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh decoupleR_2.8.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R decoupleR.buildbin-libdir
StartedAt: 2024-04-18 08:56:58 -0400 (Thu, 18 Apr 2024)
EndedAt: 2024-04-18 08:57:05 -0400 (Thu, 18 Apr 2024)
EllapsedTime: 6.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf decoupleR.buildbin-libdir && mkdir decoupleR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh decoupleR_2.8.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R decoupleR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=decoupleR.buildbin-libdir decoupleR_2.8.2.tar.gz'
>>>>>>> 

* installing *source* package ‘decoupleR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
Warning in file(con, "w") :
  cannot open file '/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/decoupleR.buildbin-libdir/00LOCK-decoupleR/00new/decoupleR/doc/index.html': No such file or directory
Error in file(con, "w") : cannot open the connection
ERROR: installing vignettes failed
* removing ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/decoupleR.buildbin-libdir/decoupleR’