Back to Mac ARM64 build report for BioC 3.18
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-03-28 11:32:18 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 419/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
concordexR 1.2.0  (landing page)
Kayla Jackson
Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/concordexR
git_branch: RELEASE_3_18
git_last_commit: adee426
git_last_commit_date: 2023-10-24 11:48:29 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for concordexR on kjohnson1


To the developers/maintainers of the concordexR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: concordexR
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data concordexR
StartedAt: 2024-03-26 15:55:06 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 15:56:19 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 73.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data concordexR
###
##############################################################################
##############################################################################


* checking for file ‘concordexR/DESCRIPTION’ ... OK
* preparing ‘concordexR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘concordex-demo.Rmd’ using rmarkdown
2024-03-26 15:56:00.209 R[271:393286717] XType: Using static font registry.

Quitting from lines 113-114 [unnamed-chunk-8] (concordex-demo.Rmd)
Error: processing vignette 'concordex-demo.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘concordex-demo.Rmd’

--- re-building ‘overview.Rmd’ using rmarkdown
--- finished re-building ‘overview.Rmd’

SUMMARY: processing the following file failed:
  ‘concordex-demo.Rmd’

Error: Vignette re-building failed.
Execution halted