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This page was generated on 2024-04-18 11:32:07 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
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Package 198/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.8.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_18
git_last_commit: 0efcfbf
git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on kjohnson1


To the developers/maintainers of the biodbHmdb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz
StartedAt: 2024-04-17 07:10:12 -0400 (Wed, 17 Apr 2024)
EndedAt: 2024-04-17 07:11:05 -0400 (Wed, 17 Apr 2024)
EllapsedTime: 53.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/biodbHmdb.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-04-17 07:10:48.642][biodb::testContext]
biodb.INFO [2024-04-17 07:10:48.647][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:48.648][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-04-17 07:10:48.649][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:48.650][biodb::testContext]
biodb.INFO [2024-04-17 07:10:48.652][biodb::testThat]
biodb.INFO [2024-04-17 07:10:48.653][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-04-17 07:10:48.654][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:48.655][biodb::testThat]
biodb.INFO [2024-04-17 07:10:48.824][biodb::testContext]
biodb.INFO [2024-04-17 07:10:48.825][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:48.826][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-04-17 07:10:48.827][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:48.828][biodb::testContext]
biodb.INFO [2024-04-17 07:10:48.841][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:48.843][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:48.854][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:48.855][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-17 07:10:48.856][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.860][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-17 07:10:48.877][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.880][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-17 07:10:48.881][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.884][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-17 07:10:48.885][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-17 07:10:48.886][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-17 07:10:48.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.889][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-17 07:10:48.890][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-17 07:10:48.891][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.894][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-17 07:10:48.895][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-17 07:10:48.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.899][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-17 07:10:48.900][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-17 07:10:48.902][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-17 07:10:48.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.905][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-17 07:10:48.906][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.909][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-17 07:10:48.910][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-17 07:10:48.911][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-17 07:10:48.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.915][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:48.918][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-17 07:10:48.919][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-17 07:10:48.920][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-17 07:10:48.922][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-17 07:10:48.923][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-17 07:10:48.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.927][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-17 07:10:48.928][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-17 07:10:48.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.931][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-17 07:10:48.932][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-17 07:10:48.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.935][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-17 07:10:48.936][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-17 07:10:48.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.940][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-17 07:10:48.941][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-17 07:10:48.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.943][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-17 07:10:48.944][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-17 07:10:48.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.947][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:48.948][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-17 07:10:48.968][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-17 07:10:48.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.972][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-17 07:10:48.973][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-17 07:10:48.974][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-17 07:10:48.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:48.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:48.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:48.982][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-17 07:10:49.018][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.043][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-17 07:10:49.044][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.045][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:49.046][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.047][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.048][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.048][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.051][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:49.052][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:49.054][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.055][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-17 07:10:49.056][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:49.056][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.057][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.058][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:49.058][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:49.058][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:49.058][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:49.058][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:49.059][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:49.060][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.061][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.061][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:49.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.064][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.065][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.065][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.066][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.067][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.068][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.069][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-17 07:10:49.070][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.071][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:49.072][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.073][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:49.075][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.076][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.077][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.078][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.080][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:49.081][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:49.082][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.083][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-17 07:10:49.083][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:49.084][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.085][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.086][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:49.086][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:49.086][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:49.086][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:49.086][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:49.087][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:49.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.088][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.089][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:49.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.091][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.092][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.093][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.094][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.094][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.095][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.096][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-17 07:10:49.098][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.099][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-17 07:10:49.099][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.100][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:49.101][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.102][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.103][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.103][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.104][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:49.105][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:49.106][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.107][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-17 07:10:49.107][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:49.108][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.109][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.110][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.111][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:49.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:49.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.115][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.116][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.117][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.117][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.118][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.119][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.120][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-17 07:10:49.122][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.123][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:49.123][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.124][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:49.125][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.126][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.127][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.127][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.128][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:49.129][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:49.130][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.131][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-17 07:10:49.132][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:49.132][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.133][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.134][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:49.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:49.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.139][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.140][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.141][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.141][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.143][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.149][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:49.150][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.221][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-17 07:10:49.228][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-17 07:10:49.229][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-17 07:10:49.231][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-17 07:10:49.233][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-17 07:10:49.234][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:49.235][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:49.236][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:49.238][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-17 07:10:49.239][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:49.240][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:49.241][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-17 07:10:49.242][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:49.243][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:49.245][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-17 07:10:49.246][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:49.247][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-17 07:10:49.248][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-17 07:10:49.249][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-17 07:10:49.251][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-17 07:10:49.252][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-17 07:10:49.253][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-17 07:10:49.254][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-17 07:10:49.255][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-17 07:10:49.256][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-17 07:10:49.257][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-17 07:10:49.259][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-17 07:10:49.260][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-17 07:10:49.261][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-17 07:10:49.262][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-17 07:10:49.263][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-17 07:10:49.264][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-17 07:10:49.266][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-17 07:10:49.267][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-17 07:10:49.268][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-17 07:10:49.269][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-17 07:10:49.270][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-17 07:10:49.271][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-17 07:10:49.272][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-17 07:10:49.273][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-17 07:10:49.275][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-17 07:10:49.276][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-17 07:10:49.277][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-17 07:10:49.278][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-17 07:10:49.279][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-17 07:10:49.280][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-17 07:10:49.281][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-17 07:10:49.282][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-17 07:10:49.283][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-17 07:10:49.285][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-17 07:10:49.286][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-17 07:10:49.287][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-17 07:10:49.288][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-17 07:10:49.289][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-17 07:10:49.290][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-17 07:10:49.291][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-17 07:10:49.292][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-17 07:10:49.293][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-17 07:10:49.295][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-17 07:10:49.296][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-17 07:10:49.297][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-17 07:10:49.298][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-17 07:10:49.299][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-17 07:10:49.300][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-17 07:10:49.303][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-17 07:10:49.304][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-17 07:10:49.306][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-17 07:10:49.308][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-17 07:10:49.309][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-17 07:10:49.310][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-17 07:10:49.311][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-17 07:10:49.313][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-17 07:10:49.314][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-17 07:10:49.315][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-17 07:10:49.316][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-17 07:10:49.317][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-17 07:10:49.318][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-17 07:10:49.319][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-17 07:10:49.321][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-17 07:10:49.322][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-17 07:10:49.323][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-17 07:10:49.324][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-17 07:10:49.325][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-17 07:10:49.332][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-17 07:10:49.334][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:49.339][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:49.340][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.342][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:49.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:49.450][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:49.459][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:49.461][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.462][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.463][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.464][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:49.465][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.466][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-17 07:10:49.466][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.467][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.468][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-17 07:10:49.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:49.470][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.470][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-17 07:10:49.471][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-17 07:10:49.472][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-17 07:10:49.473][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:49.474][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:49.474][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-17 07:10:49.474][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-17 07:10:49.475][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-17 07:10:49.476][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.476][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.477][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:49.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:49.478][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:49.479][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:49.480][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:49.480][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-17 07:10:49.481][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.481][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.482][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:49.483][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:49.489][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-17 07:10:49.490][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:49.492][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:49.493][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:49.494][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:49.529][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:49.531][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-17 07:10:49.537][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:49.543][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:49.549][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:49.550][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:49.551][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-17 07:10:49.552][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-17 07:10:49.553][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:49.553][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-17 07:10:49.554][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:49.555][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:49.556][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-17 07:10:49.556][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-17 07:10:49.557][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:49.573][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:49.574][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:49.575][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:49.576][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:49.577][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:49.578][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-17 07:10:49.590][biodb::testThat]
biodb.INFO [2024-04-17 07:10:49.591][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-04-17 07:10:49.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:49.593][biodb::testThat]
biodb.TRACE[2024-04-17 07:10:49.598][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-04-17 07:10:49.600][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:49.606][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:49.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:49.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:49.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:49.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:49.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:49.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:49.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:49.698][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:49.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.701][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:49.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:49.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.723][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:49.724][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:49.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.725][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.755][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.756][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.757][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.762][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.763][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.764][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.771][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.776][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.777][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.778][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:49.784][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.785][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:49.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:49.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.792][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.797][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.800][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.803][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.809][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.811][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.813][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:49.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.821][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:49.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:49.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.829][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:49.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:49.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.838][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:49.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:49.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.846][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.852][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:49.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:49.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.855][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:49.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.860][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:49.861][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:49.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.870][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:49.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:49.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.878][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.883][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:49.884][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.885][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:49.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:49.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:49.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:49.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:49.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:50.221][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-17 07:10:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:50.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.333][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.353][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.356][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.357][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.358][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.389][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.389][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.391][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.419][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.446][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.476][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.498][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.501][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.528][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.529][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.530][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.565][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.567][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.580][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.592][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.593][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.594][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.620][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.643][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.643][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.645][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.668][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.669][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.671][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.697][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.731][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.756][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.785][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.811][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.812][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.814][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.827][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:50.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:50.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.830][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.835][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.836][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:50.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.838][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.843][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.844][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:50.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.845][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:50.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.854][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.861][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.862][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.864][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.870][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.872][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:50.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.873][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.879][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.880][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:50.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.883][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.888][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.889][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:50.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.891][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.896][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:50.897][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.898][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:50.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:50.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.915][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:50.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:50.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.923][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.931][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.936][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:50.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.939][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.949][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.954][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:50.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:50.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.957][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.964][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.969][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.970][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:50.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.972][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:50.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:50.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:50.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:50.979][ef$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:50.987][biodb::testThat]
biodb.INFO [2024-04-17 07:10:50.988][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-04-17 07:10:50.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:50.990][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:51.004][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-04-17 07:10:51.018][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:51.023][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:51.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-04-17 07:10:51.028][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-17 07:10:51.031][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-04-17 07:10:51.032][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:51.055][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:51.056][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:51.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:51.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:51.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:51.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:51.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:51.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:51.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:51.071][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.074][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.078][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.079][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.081][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.085][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.086][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.087][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.100][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.101][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.103][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.109][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.114][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.115][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.116][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.123][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.130][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.134][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.135][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.136][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.142][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.143][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:51.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:51.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.149][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:51.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:51.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.156][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.162][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.169][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.173][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.176][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.180][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.181][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.182][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:51.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:51.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.189][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:51.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.193][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:51.194][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.195][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:51.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:51.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.425][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.428][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.461][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-17 07:10:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-04-17 07:10:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-04-17 07:10:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-04-17 07:10:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-04-17 07:10:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-04-17 07:10:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-04-17 07:10:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:51.483][biodb::testThat]
biodb.INFO [2024-04-17 07:10:51.484][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-04-17 07:10:51.485][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:51.486][biodb::testThat]
biodb.TRACE[2024-04-17 07:10:51.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.492][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.494][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-04-17 07:10:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.544][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-04-17 07:10:51.546][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-04-17 07:10:51.547][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-17 07:10:51.548][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-17 07:10:51.550][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.551][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.552][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:51.554][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.554][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:51.556][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:51.557][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:51.558][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:51.559][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:51.560][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:51.561][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.576][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:51.577][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:51.577][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-04-17 07:10:51.591][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.592][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.594][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.595][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-04-17 07:10:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.621][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-04-17 07:10:51.671][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-17 07:10:51.673][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-04-17 07:10:51.673][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-04-17 07:10:51.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.697][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.699][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:51.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.702][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:51.717][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:51.719][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:51.720][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:51.721][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:51.721][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:51.722][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.734][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.742][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:51.743][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:51.744][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-04-17 07:10:51.757][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.758][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.760][ef$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.761][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-04-17 07:10:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.790][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-04-17 07:10:51.793][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-04-17 07:10:51.794][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-04-17 07:10:51.795][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-04-17 07:10:51.797][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.798][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.800][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:51.801][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.802][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:51.803][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:51.804][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:51.805][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:51.806][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:51.807][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:51.808][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.823][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:51.824][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:51.825][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-04-17 07:10:51.843][biodb::testThat]
biodb.INFO [2024-04-17 07:10:51.844][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-04-17 07:10:51.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:51.846][biodb::testThat]
biodb.TRACE[2024-04-17 07:10:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.891][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-04-17 07:10:51.892][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-17 07:10:51.893][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-04-17 07:10:51.895][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.896][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.897][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:51.898][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:51.899][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:51.900][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:51.901][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:51.902][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:51.903][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:51.904][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:51.905][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:51.922][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:51.923][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-04-17 07:10:51.940][biodb::testThat]
biodb.INFO [2024-04-17 07:10:51.941][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-04-17 07:10:51.943][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:51.944][biodb::testThat]
biodb.TRACE[2024-04-17 07:10:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:51.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:51.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:52.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-04-17 07:10:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-04-17 07:10:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-04-17 07:10:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-04-17 07:10:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:52.051][biodb::testThat]
biodb.INFO [2024-04-17 07:10:52.052][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-04-17 07:10:52.053][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:52.054][biodb::testThat]
biodb.INFO [2024-04-17 07:10:52.063][biodb::testThat]
biodb.INFO [2024-04-17 07:10:52.065][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-04-17 07:10:52.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:52.066][biodb::testThat]
biodb.INFO [2024-04-17 07:10:52.075][biodb::testThat]
biodb.INFO [2024-04-17 07:10:52.076][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-04-17 07:10:52.077][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:52.078][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:52.082][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-04-17 07:10:53.517][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-04-17 07:10:53.799][biodb::testThat]
biodb.INFO [2024-04-17 07:10:53.800][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-04-17 07:10:53.801][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:53.802][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:54.474][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-04-17 07:10:54.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:54.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:54.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.734][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.735][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:54.737][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:54.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.739][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.740][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:54.741][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:54.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.743][ef$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:54.745][biodb::testThat]
biodb.INFO [2024-04-17 07:10:54.745][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-04-17 07:10:54.746][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:54.747][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:54.749][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-04-17 07:10:54.794][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:54.796][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:54.797][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:54.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-04-17 07:10:54.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-04-17 07:10:54.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-04-17 07:10:54.816][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:54.817][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:54.819][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:54.820][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:54.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:54.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:54.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:54.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:54.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:54.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:54.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:54.871][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-04-17 07:10:54.872][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-04-17 07:10:54.892][biodb::testThat]
biodb.INFO [2024-04-17 07:10:54.893][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-04-17 07:10:54.894][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:54.895][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:54.905][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-04-17 07:10:54.906][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-04-17 07:10:54.907][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:54.909][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:54.910][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:54.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-04-17 07:10:54.915][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-04-17 07:10:54.916][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-04-17 07:10:54.918][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:54.919][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:54.920][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:54.921][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:54.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:54.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:54.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:54.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:54.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:54.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:54.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:54.965][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-04-17 07:10:54.965][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-04-17 07:10:54.966][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-04-17 07:10:54.984][biodb::testThat]
biodb.INFO [2024-04-17 07:10:54.985][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-04-17 07:10:54.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:54.987][biodb::testThat]
biodb.INFO [2024-04-17 07:10:55.020][biodb::testThat]
biodb.INFO [2024-04-17 07:10:55.021][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-04-17 07:10:55.022][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:55.023][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:55.026][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.027][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.029][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:55.030][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.031][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:55.032][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:55.033][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:55.034][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:55.035][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-04-17 07:10:55.046][biodb::testThat]
biodb.INFO [2024-04-17 07:10:55.048][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-04-17 07:10:55.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:55.049][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:55.052][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.053][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.054][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:55.056][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.057][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:55.058][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:55.059][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:55.060][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:55.061][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-04-17 07:10:55.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:55.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:55.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.076][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.077][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:55.078][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:55.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.079][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.080][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.081][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.082][ef$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:55.083][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-17 07:10:55.084][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-17 07:10:55.092][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-17 07:10:55.093][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-17 07:10:55.094][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.095][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.097][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-17 07:10:55.102][biodb::testContext]
biodb.INFO [2024-04-17 07:10:55.103][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:55.105][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-04-17 07:10:55.106][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:55.107][biodb::testContext]
biodb.INFO [2024-04-17 07:10:55.112][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:55.114][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:55.119][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:55.120][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-17 07:10:55.122][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.125][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-17 07:10:55.126][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.129][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-17 07:10:55.130][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.133][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-17 07:10:55.134][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-17 07:10:55.135][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-17 07:10:55.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.139][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-17 07:10:55.141][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-17 07:10:55.142][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.145][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-17 07:10:55.146][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-17 07:10:55.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.149][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-17 07:10:55.150][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-17 07:10:55.151][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-17 07:10:55.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.154][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-17 07:10:55.155][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.158][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-17 07:10:55.159][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-17 07:10:55.161][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-17 07:10:55.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.175][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:55.177][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-17 07:10:55.179][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-17 07:10:55.180][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-17 07:10:55.181][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-17 07:10:55.182][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-17 07:10:55.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.185][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-17 07:10:55.186][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-17 07:10:55.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.189][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-17 07:10:55.190][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-17 07:10:55.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.194][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-17 07:10:55.195][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-17 07:10:55.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.198][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-17 07:10:55.199][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-17 07:10:55.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.204][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-17 07:10:55.205][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-17 07:10:55.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.209][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:55.210][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-17 07:10:55.226][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-17 07:10:55.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.231][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-17 07:10:55.232][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-17 07:10:55.233][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-17 07:10:55.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.236][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-17 07:10:55.238][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.239][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-17 07:10:55.240][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.241][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:55.242][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.243][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.245][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:55.246][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:55.247][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.247][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-17 07:10:55.248][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:55.249][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.250][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.251][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:55.251][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:55.251][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:55.251][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:55.251][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:55.252][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:55.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.254][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:55.255][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.256][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.257][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.258][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.258][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.259][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.260][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.261][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-17 07:10:55.263][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.264][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:55.265][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.265][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:55.266][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.267][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.268][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.269][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.269][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:55.270][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:55.272][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.273][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-17 07:10:55.274][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:55.275][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.275][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.276][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:55.276][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:55.276][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:55.276][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:55.276][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:55.277][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:55.278][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.279][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.279][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:55.280][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.281][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.282][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.283][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.283][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.284][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.285][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.286][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.287][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-17 07:10:55.288][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.289][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-17 07:10:55.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.291][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:55.292][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.293][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.293][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.294][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.295][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:55.296][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:55.297][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.297][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-17 07:10:55.298][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:55.299][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.300][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.300][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.301][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:55.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:55.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.306][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.306][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.308][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.315][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.316][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.317][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-17 07:10:55.318][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.319][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:55.320][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.321][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:55.323][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.324][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.325][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.326][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.327][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:55.328][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:55.329][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.330][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-17 07:10:55.331][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:55.332][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.334][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.335][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:55.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.338][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:55.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.342][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.343][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.344][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.345][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.347][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:55.348][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.414][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-17 07:10:55.416][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-17 07:10:55.417][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-17 07:10:55.418][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-17 07:10:55.419][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-17 07:10:55.420][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:55.422][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:55.423][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:55.424][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-17 07:10:55.425][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:55.426][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:55.427][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-17 07:10:55.429][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:55.430][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:55.431][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-17 07:10:55.438][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:55.440][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-17 07:10:55.441][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-17 07:10:55.443][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-17 07:10:55.445][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-17 07:10:55.446][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-17 07:10:55.447][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-17 07:10:55.448][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-17 07:10:55.450][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-17 07:10:55.451][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-17 07:10:55.452][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-17 07:10:55.453][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-17 07:10:55.455][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-17 07:10:55.456][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-17 07:10:55.458][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-17 07:10:55.459][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-17 07:10:55.460][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-17 07:10:55.461][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-17 07:10:55.462][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-17 07:10:55.464][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-17 07:10:55.465][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-17 07:10:55.466][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-17 07:10:55.467][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-17 07:10:55.468][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-17 07:10:55.471][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-17 07:10:55.472][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-17 07:10:55.473][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-17 07:10:55.475][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-17 07:10:55.476][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-17 07:10:55.477][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-17 07:10:55.478][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-17 07:10:55.479][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-17 07:10:55.481][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-17 07:10:55.483][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-17 07:10:55.484][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-17 07:10:55.485][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-17 07:10:55.486][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-17 07:10:55.487][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-17 07:10:55.489][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-17 07:10:55.490][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-17 07:10:55.491][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-17 07:10:55.492][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-17 07:10:55.493][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-17 07:10:55.494][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-17 07:10:55.496][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-17 07:10:55.497][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-17 07:10:55.499][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-17 07:10:55.500][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-17 07:10:55.501][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-17 07:10:55.503][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-17 07:10:55.504][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-17 07:10:55.505][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-17 07:10:55.506][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-17 07:10:55.507][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-17 07:10:55.509][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-17 07:10:55.510][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-17 07:10:55.511][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-17 07:10:55.512][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-17 07:10:55.513][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-17 07:10:55.514][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-17 07:10:55.516][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-17 07:10:55.517][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-17 07:10:55.518][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-17 07:10:55.519][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-17 07:10:55.520][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-17 07:10:55.521][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-17 07:10:55.523][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-17 07:10:55.524][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-17 07:10:55.525][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-17 07:10:55.527][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:55.528][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:55.528][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.530][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:55.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:55.666][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:55.668][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:55.670][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.671][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.672][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.673][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:55.673][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.674][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-17 07:10:55.675][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.677][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-17 07:10:55.677][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:55.678][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.679][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-17 07:10:55.680][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-17 07:10:55.681][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-17 07:10:55.682][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:55.683][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:55.683][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-17 07:10:55.683][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-17 07:10:55.683][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-17 07:10:55.684][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.686][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:55.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:55.687][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:55.688][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:55.689][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:55.689][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-17 07:10:55.690][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.690][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.691][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:55.692][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:55.693][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-17 07:10:55.694][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:55.696][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:55.697][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:55.698][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:55.701][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:55.702][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-17 07:10:55.703][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:55.705][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:55.706][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:55.707][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:55.708][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-17 07:10:55.709][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-17 07:10:55.709][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:55.709][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-17 07:10:55.710][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:55.711][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:55.712][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-17 07:10:55.719][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-17 07:10:55.721][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:55.722][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:55.723][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:55.724][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:55.725][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:55.726][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:55.727][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-17 07:10:55.728][biodb::testThat]
biodb.INFO [2024-04-17 07:10:55.729][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-04-17 07:10:55.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:55.731][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:55.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.737][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.740][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:55.742][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.743][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:55.744][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:55.745][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:55.746][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:55.747][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:55.750][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-04-17 07:10:55.757][biodb::testThat]
biodb.INFO [2024-04-17 07:10:55.758][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-04-17 07:10:55.759][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:55.760][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:55.762][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-04-17 07:10:55.763][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:55.764][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:55.766][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:55.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-04-17 07:10:55.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-17 07:10:55.772][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-04-17 07:10:55.773][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:55.775][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:55.776][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:55.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:55.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:55.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:55.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:55.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:55.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:55.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:55.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:55.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:55.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.793][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.798][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.799][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.800][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.805][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.806][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.808][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.811][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.815][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.816][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.818][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.819][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.826][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.831][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.832][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.834][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:55.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:55.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.841][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:55.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:55.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:55.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:55.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.849][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.854][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.858][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:55.863][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.873][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.879][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:55.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:55.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.881][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:55.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:55.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.890][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:55.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:55.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:55.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:55.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.898][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:55.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:55.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.908][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.913][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:55.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:55.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.916][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:55.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.920][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:55.921][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:55.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.923][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:55.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:55.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.930][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.934][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:55.935][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:55.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.937][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:55.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.958][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:55.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.961][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.964][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:56.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:56.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.116][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.200][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:56.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:56.226][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-04-17 07:10:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-04-17 07:10:56.244][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-17 07:10:56.245][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-17 07:10:56.246][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-17 07:10:56.247][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-17 07:10:56.248][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.250][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.251][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-17 07:10:56.258][biodb::testContext]
biodb.INFO [2024-04-17 07:10:56.260][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:56.261][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-04-17 07:10:56.261][biodb::testContext] ********************************************************************************
biodb.INFO [2024-04-17 07:10:56.262][biodb::testContext]
biodb.INFO [2024-04-17 07:10:56.276][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:56.278][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:56.283][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:56.284][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-04-17 07:10:56.285][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.288][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-04-17 07:10:56.289][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.292][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-04-17 07:10:56.293][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.296][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-04-17 07:10:56.297][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-04-17 07:10:56.300][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-04-17 07:10:56.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.305][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-04-17 07:10:56.306][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-04-17 07:10:56.307][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.310][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-04-17 07:10:56.311][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-04-17 07:10:56.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.314][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-04-17 07:10:56.315][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-04-17 07:10:56.316][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-04-17 07:10:56.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.319][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-04-17 07:10:56.320][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.323][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-04-17 07:10:56.323][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-04-17 07:10:56.324][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-04-17 07:10:56.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.327][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:56.328][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-04-17 07:10:56.329][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-04-17 07:10:56.330][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-04-17 07:10:56.331][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-04-17 07:10:56.331][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-04-17 07:10:56.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.334][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-04-17 07:10:56.335][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-04-17 07:10:56.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.338][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-04-17 07:10:56.339][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-04-17 07:10:56.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.342][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-04-17 07:10:56.343][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-04-17 07:10:56.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.346][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-04-17 07:10:56.347][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-04-17 07:10:56.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.353][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-04-17 07:10:56.354][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-04-17 07:10:56.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.357][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-04-17 07:10:56.358][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-04-17 07:10:56.385][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-04-17 07:10:56.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.391][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-04-17 07:10:56.392][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-04-17 07:10:56.394][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-04-17 07:10:56.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.398][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-04-17 07:10:56.400][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.401][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-04-17 07:10:56.402][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.403][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:56.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.409][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:56.410][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:56.411][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.412][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-04-17 07:10:56.413][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:56.413][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.414][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.415][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:56.415][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:56.415][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:56.415][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:56.415][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:56.416][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:56.417][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.418][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:56.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.421][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.422][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.422][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.423][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.424][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.425][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.426][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-04-17 07:10:56.428][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.428][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:56.429][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.430][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:56.438][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.439][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.441][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.442][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:56.443][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:56.444][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.445][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-04-17 07:10:56.446][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:56.447][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.447][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.448][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:56.448][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-04-17 07:10:56.448][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-04-17 07:10:56.448][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-04-17 07:10:56.448][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-04-17 07:10:56.450][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:56.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.453][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.454][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:56.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.457][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.458][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.459][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.460][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.460][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.461][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.462][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-04-17 07:10:56.464][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.465][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-04-17 07:10:56.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.467][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:56.468][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.469][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.469][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.470][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.471][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-04-17 07:10:56.472][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:56.473][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.474][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-04-17 07:10:56.474][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:56.475][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.477][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:56.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.480][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:56.481][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.483][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.484][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.484][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.485][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.486][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.487][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-04-17 07:10:56.489][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.490][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-04-17 07:10:56.491][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.491][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:56.492][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.493][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.494][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.495][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.495][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-04-17 07:10:56.496][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:56.497][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.498][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-04-17 07:10:56.499][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:56.499][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.500][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.501][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.502][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-04-17 07:10:56.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.503][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:56.506][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.509][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.510][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.511][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.512][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.513][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.514][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.515][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:56.516][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.594][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-04-17 07:10:56.596][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-04-17 07:10:56.598][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-04-17 07:10:56.599][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-04-17 07:10:56.601][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-04-17 07:10:56.602][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:56.604][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:56.605][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:56.606][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-04-17 07:10:56.607][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:56.608][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:56.609][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-04-17 07:10:56.610][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-04-17 07:10:56.612][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-04-17 07:10:56.613][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-04-17 07:10:56.615][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:56.616][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-04-17 07:10:56.617][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-04-17 07:10:56.618][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-04-17 07:10:56.619][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-04-17 07:10:56.621][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-04-17 07:10:56.623][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-04-17 07:10:56.625][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-04-17 07:10:56.627][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-04-17 07:10:56.628][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-04-17 07:10:56.629][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-04-17 07:10:56.630][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-04-17 07:10:56.632][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-04-17 07:10:56.633][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-04-17 07:10:56.634][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-04-17 07:10:56.635][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-04-17 07:10:56.636][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-04-17 07:10:56.638][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-04-17 07:10:56.639][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-04-17 07:10:56.640][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-04-17 07:10:56.641][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-04-17 07:10:56.642][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-04-17 07:10:56.644][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-04-17 07:10:56.645][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-04-17 07:10:56.646][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-04-17 07:10:56.647][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-04-17 07:10:56.648][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-04-17 07:10:56.650][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-04-17 07:10:56.651][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-04-17 07:10:56.652][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-04-17 07:10:56.654][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-04-17 07:10:56.655][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-04-17 07:10:56.657][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-04-17 07:10:56.658][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-04-17 07:10:56.659][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-04-17 07:10:56.660][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-04-17 07:10:56.661][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-04-17 07:10:56.662][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-04-17 07:10:56.664][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-04-17 07:10:56.665][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-04-17 07:10:56.666][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-04-17 07:10:56.667][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-04-17 07:10:56.668][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-04-17 07:10:56.671][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-04-17 07:10:56.673][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-04-17 07:10:56.674][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-04-17 07:10:56.675][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-04-17 07:10:56.677][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-04-17 07:10:56.678][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-04-17 07:10:56.679][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-04-17 07:10:56.680][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-04-17 07:10:56.681][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-04-17 07:10:56.683][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-04-17 07:10:56.684][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-04-17 07:10:56.685][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-04-17 07:10:56.693][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-04-17 07:10:56.695][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-04-17 07:10:56.697][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-04-17 07:10:56.699][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-04-17 07:10:56.700][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-04-17 07:10:56.701][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-04-17 07:10:56.703][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-04-17 07:10:56.704][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-04-17 07:10:56.705][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-04-17 07:10:56.706][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-04-17 07:10:56.708][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-04-17 07:10:56.709][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-04-17 07:10:56.710][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-04-17 07:10:56.711][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-04-17 07:10:56.713][initialize] This is biodb version 1.10.0.
biodb.DEBUG[2024-04-17 07:10:56.714][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-04-17 07:10:56.715][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.716][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-04-17 07:10:56.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:56.827][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-04-17 07:10:56.829][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:56.831][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.832][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.833][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-04-17 07:10:56.835][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.836][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-04-17 07:10:56.837][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.837][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.838][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-04-17 07:10:56.839][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-04-17 07:10:56.840][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.841][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-04-17 07:10:56.842][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-04-17 07:10:56.844][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-04-17 07:10:56.845][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-04-17 07:10:56.845][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-04-17 07:10:56.845][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-04-17 07:10:56.845][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-04-17 07:10:56.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.847][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.848][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-04-17 07:10:56.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-04-17 07:10:56.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-04-17 07:10:56.851][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-04-17 07:10:56.852][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:56.852][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-04-17 07:10:56.853][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.855][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-04-17 07:10:56.856][self$setPropertyValue]
biodb.DEBUG[2024-04-17 07:10:56.857][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-04-17 07:10:56.859][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-04-17 07:10:56.860][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-04-17 07:10:56.862][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-04-17 07:10:56.863][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-04-17 07:10:56.870][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:56.871][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-04-17 07:10:56.873][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:56.875][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:56.876][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:56.877][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:56.878][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-04-17 07:10:56.879][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-04-17 07:10:56.880][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-04-17 07:10:56.880][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-04-17 07:10:56.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-04-17 07:10:56.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-04-17 07:10:56.882][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-04-17 07:10:56.883][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-04-17 07:10:56.884][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-04-17 07:10:56.885][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:56.886][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:56.887][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:56.888][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-04-17 07:10:56.889][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-04-17 07:10:56.890][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-04-17 07:10:56.892][biodb::testThat]
biodb.INFO [2024-04-17 07:10:56.892][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-04-17 07:10:56.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-04-17 07:10:56.894][biodb::testThat]
biodb.DEBUG[2024-04-17 07:10:56.896][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-17 07:10:56.897][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-04-17 07:10:56.898][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-04-17 07:10:56.901][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:56.902][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:56.904][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:56.905][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:56.906][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:56.907][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:56.910][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:56.911][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:56.912][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:56.913][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:56.914][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-04-17 07:10:56.916][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-04-17 07:10:56.917][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:56.919][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:56.920][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:56.922][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-04-17 07:10:56.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-17 07:10:56.925][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-04-17 07:10:56.926][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:56.927][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:56.928][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:56.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:56.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:56.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:56.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:56.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:56.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:56.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:56.943][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.946][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.951][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.952][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.953][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.958][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:56.959][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:56.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.971][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.973][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.976][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:56.977][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:56.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.979][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:56.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:56.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.986][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.991][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:56.991][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:56.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.993][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:56.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:56.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.000][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.010][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.015][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.017][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.021][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.022][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.024][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.028][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.031][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.038][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.047][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.055][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.059][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.062][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.067][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.068][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.069][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.075][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.077][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.082][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:57.083][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.084][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.245][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:57.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.342][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.388][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-04-17 07:10:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.404][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:57.405][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:57.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:57.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:57.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:57.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:57.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:57.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:57.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:57.416][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-04-17 07:10:57.417][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-04-17 07:10:57.419][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:57.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-04-17 07:10:57.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-04-17 07:10:57.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-04-17 07:10:57.425][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-04-17 07:10:57.427][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-04-17 07:10:57.429][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-04-17 07:10:57.430][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-04-17 07:10:57.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:57.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:57.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:57.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:57.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:57.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:57.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:57.448][ef$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.451][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.456][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.457][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.458][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.459][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.463][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.464][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.465][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.469][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.470][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.472][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.478][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.483][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.484][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.485][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.500][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.507][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.511][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.512][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.513][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.521][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.522][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.523][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.531][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.538][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.545][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.551][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.556][ef$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.558][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.563][ef$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.564][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.565][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.572][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.577][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:57.579][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.581][ef$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-04-17 07:10:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-04-17 07:10:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.609][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-04-17 07:10:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-04-17 07:10:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-04-17 07:10:57.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-04-17 07:10:57.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-04-17 07:10:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-04-17 07:10:57.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.692][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-04-17 07:10:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-04-17 07:10:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-04-17 07:10:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-04-17 07:10:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-04-17 07:10:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-04-17 07:10:57.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-04-17 07:10:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-04-17 07:10:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-04-17 07:10:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-04-17 07:10:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-04-17 07:10:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-04-17 07:10:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-04-17 07:10:57.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-04-17 07:10:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-04-17 07:10:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-04-17 07:10:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-04-17 07:10:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.879][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-04-17 07:10:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.896][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:57.897][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:57.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:57.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:57.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:57.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:57.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:57.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:57.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:57.913][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-17 07:10:57.915][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-04-17 07:10:57.917][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-04-17 07:10:57.919][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:57.921][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:57.922][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:57.924][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:57.925][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:57.926][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:57.927][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:57.928][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:57.929][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:57.929][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:57.930][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.955][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:57.956][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:57.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:57.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:57.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:57.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:57.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:57.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:57.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:57.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.976][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:57.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:57.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:57.993][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-04-17 07:10:57.994][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:57.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:57.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:57.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:58.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:58.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:58.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:58.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-04-17 07:10:58.018][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-04-17 07:10:58.019][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-04-17 07:10:58.020][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-04-17 07:10:58.022][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:58.024][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:58.025][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-04-17 07:10:58.026][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-04-17 07:10:58.027][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-04-17 07:10:58.028][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-04-17 07:10:58.029][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-04-17 07:10:58.030][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-04-17 07:10:58.031][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-04-17 07:10:58.032][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-04-17 07:10:58.033][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-04-17 07:10:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:58.059][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-04-17 07:10:58.060][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-04-17 07:10:58.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:58.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:58.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:58.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:58.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:58.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:58.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-04-17 07:10:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-04-17 07:10:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-04-17 07:10:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-04-17 07:10:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-04-17 07:10:58.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-04-17 07:10:58.104][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-04-17 07:10:58.105][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-04-17 07:10:58.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-04-17 07:10:58.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:58.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:58.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:58.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:58.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:58.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-04-17 07:10:58.122][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-04-17 07:10:58.124][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-04-17 07:10:58.125][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-04-17 07:10:58.126][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-04-17 07:10:58.126][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-04-17 07:10:58.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-04-17 07:10:58.128][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-04-17 07:10:58.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-04-17 07:10:58.129][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-04-17 07:10:58.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  9.052   0.511  12.057

Example timings