Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-03-28 11:32:16 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4376 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
a4Base 1.50.0 (landing page) Laure Cougnaud
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the a4Base package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: a4Base |
Version: 1.50.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:a4Base.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings a4Base_1.50.0.tar.gz |
StartedAt: 2024-03-27 04:43:13 -0400 (Wed, 27 Mar 2024) |
EndedAt: 2024-03-27 04:47:10 -0400 (Wed, 27 Mar 2024) |
EllapsedTime: 237.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Base.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:a4Base.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings a4Base_1.50.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/a4Base.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘a4Base/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘a4Base’ version ‘1.50.0’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘JavaGD’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘a4Base’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) filterVarInt.Rd:52: Escaped LaTeX specials: \& checkRd: (-1) histPvalue.Rd:50: Escaped LaTeX specials: \& checkRd: (-1) lassoReg.Rd:38: Escaped LaTeX specials: \& checkRd: (-1) spectralMap.Rd:49: Escaped LaTeX specials: \& checkRd: (-1) volcanoPlot.Rd:45: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spectralMap 13.288 0.660 14.069 computeLogRatio 5.176 0.127 5.330 plotLogRatio 4.945 0.139 5.131 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/a4Base.Rcheck/00check.log’ for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
name | user | system | elapsed | |
a4palette | 0.029 | 0.003 | 0.033 | |
addQuantilesColors | 2.675 | 0.193 | 2.870 | |
boxPlot | 2.620 | 0.061 | 2.723 | |
combineTwoExpressionSet | 0 | 0 | 0 | |
computeLogRatio | 5.176 | 0.127 | 5.330 | |
createExpressionSet | 0.034 | 0.002 | 0.037 | |
filterVarInt | 2.862 | 0.094 | 2.960 | |
heatmap.expressionSet | 0.001 | 0.002 | 0.003 | |
histPvalue | 1.817 | 0.062 | 1.938 | |
histpvalueplotter | 2.534 | 0.066 | 2.640 | |
lassoReg | 2.513 | 0.058 | 2.620 | |
logReg | 0.000 | 0.000 | 0.001 | |
nlcvTT | 0.000 | 0.001 | 0.001 | |
plot1gene | 2.045 | 0.066 | 2.166 | |
plotComb2Samples | 3.230 | 0.108 | 3.430 | |
plotCombMultSamples | 3.444 | 0.133 | 3.625 | |
plotCombination2genes | 3.504 | 0.059 | 3.602 | |
plotLogRatio | 4.945 | 0.139 | 5.131 | |
probabilitiesPlot | 0 | 0 | 0 | |
probe2gene | 2.180 | 0.038 | 2.224 | |
profilesPlot | 2.442 | 0.054 | 2.514 | |
propdegenescalculation | 2.573 | 0.049 | 2.631 | |
replicates | 0.001 | 0.001 | 0.001 | |
spectralMap | 13.288 | 0.660 | 14.069 | |
tTest | 2.834 | 0.083 | 2.923 | |
volcanoPlot | 3.124 | 0.074 | 3.205 | |