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This page was generated on 2024-04-18 11:32:19 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1984/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SMAD 1.18.0  (landing page)
Qingzhou Zhang
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/SMAD
git_branch: RELEASE_3_18
git_last_commit: 2b2f634
git_last_commit_date: 2023-10-24 11:10:39 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for SMAD on kjohnson1


To the developers/maintainers of the SMAD package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SMAD
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SMAD
StartedAt: 2024-04-16 10:13:26 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 10:13:43 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 17.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SMAD
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘SMAD’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c GetDICE.cpp -o GetDICE.o
GetDICE.cpp:16:12: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
        if((mat(r, c1) == 1) & (mat(r, c2) == 1)){
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                             &&
GetDICE.cpp:16:12: note: cast one or both operands to int to silence this warning
GetDICE.cpp:18:19: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
        } else if((mat(r, c1) == 1) & (mat(r, c2) == 0)){
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                    &&
GetDICE.cpp:18:19: note: cast one or both operands to int to silence this warning
GetDICE.cpp:20:19: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
        } else if((mat(r, c1) == 0) & (mat(r, c2) == 1)){
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                                    &&
GetDICE.cpp:20:19: note: cast one or both operands to int to silence this warning
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c GetPPN.cpp -o GetPPN.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SMAD.so GetDICE.o GetPPN.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-SMAD/00new/SMAD/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SMAD)