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This page was generated on 2024-03-28 11:32:28 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4376
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Package 1664/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rbec 1.10.0  (landing page)
Pengfan Zhang
Snapshot Date: 2024-03-26 09:00:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/Rbec
git_branch: RELEASE_3_18
git_last_commit: fa01a45
git_last_commit_date: 2023-10-24 11:32:34 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  ERROR    ERROR  skippedskipped

INSTALL results for Rbec on kjohnson1


To the developers/maintainers of the Rbec package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Rbec
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rbec
StartedAt: 2024-03-26 10:59:55 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 11:00:07 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 12.7 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rbec
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘Rbec’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/Rbec.h:7:
./../inst/include/Rbec_RcppExports.h:14:14: warning: unused function 'validateSignature' [-Wunused-function]
        void validateSignature(const char* sig) {
             ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c kmer_dist.cpp -o kmer_dist.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c rcpp_test.cpp -o rcpp_test.o
In file included from rcpp_test.cpp:3:
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/emmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
 ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/emmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/xmmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
 ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/emmintrin.h:17:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/xmmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
#error "This header is only meant to be used on x86 and x64 architecture"
 ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:37:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/math.h:649:12: note: '__builtin_isless' declared here
    return isless(__lcpp_x, __lcpp_y);
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:545:22: note: expanded from macro 'isless'
#define isless(x, y) __builtin_isless((x),(y))
                     ^
In file included from rcpp_test.cpp:3:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/emmintrin.h:17:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/xmmintrin.h:17:
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:37:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
    ~~~~~~~~~~~~~~~~~~~~^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:54:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:71:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:133:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:163:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:193:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:220:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:243:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:264:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:291:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:314:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:335:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:356:19: error: use of undeclared identifier '__builtin_ia32_paddb'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:356:19: note: '__builtin_arm_addg' declared here
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:356:19: error: first argument of MTE builtin function must be a pointer ('__v8qi' (vector of 8 'char' values) invalid)
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^                    ~~~~~~~~~~~~
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:377:19: error: use of undeclared identifier '__builtin_ia32_paddw'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/15.0.0/include/mmintrin.h:356:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [rcpp_test.o] Error 1
ERROR: compilation failed for package ‘Rbec’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rbec’