Back to Mac ARM64 build report for BioC 3.18
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-04-18 11:32:14 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1353/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MuData 1.6.0  (landing page)
Danila Bredikhin
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/MuData
git_branch: RELEASE_3_18
git_last_commit: 42a68dd
git_last_commit_date: 2023-10-24 11:39:48 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for MuData on kjohnson1


To the developers/maintainers of the MuData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MuData
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MuData
StartedAt: 2024-04-16 22:28:56 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 22:32:37 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 221.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MuData
###
##############################################################################
##############################################################################


* checking for file ‘MuData/DESCRIPTION’ ... OK
* preparing ‘MuData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Blood-CITE-seq.Rmd’ using rmarkdown

Quitting from lines 105-108 [unnamed-chunk-7] (Blood-CITE-seq.Rmd)
Error: processing vignette 'Blood-CITE-seq.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘Blood-CITE-seq.Rmd’

--- re-building ‘Cord-Blood-CITE-seq.Rmd’ using rmarkdown
2024-04-16 22:30:23.678 R[11587:449957753] XType: Using static font registry.
--- finished re-building ‘Cord-Blood-CITE-seq.Rmd’

--- re-building ‘Getting-Started.Rmd’ using rmarkdown
--- finished re-building ‘Getting-Started.Rmd’

SUMMARY: processing the following file failed:
  ‘Blood-CITE-seq.Rmd’

Error: Vignette re-building failed.
Execution halted