Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-03-28 11:32:22 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4376 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 912/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GSEABenchmarkeR 1.22.0 (landing page) Ludwig Geistlinger
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the GSEABenchmarkeR package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GSEABenchmarkeR |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GSEABenchmarkeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GSEABenchmarkeR_1.22.0.tar.gz |
StartedAt: 2024-03-27 15:27:50 -0400 (Wed, 27 Mar 2024) |
EndedAt: 2024-03-27 15:33:21 -0400 (Wed, 27 Mar 2024) |
EllapsedTime: 330.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSEABenchmarkeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GSEABenchmarkeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GSEABenchmarkeR_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/GSEABenchmarkeR.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GSEABenchmarkeR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSEABenchmarkeR’ version ‘1.22.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSEABenchmarkeR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE evalRelevance: no visible binding for global variable ‘REL.SCORE’ Undefined global functions or variables: REL.SCORE * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed evalTypeIError 33.333 20.302 55.364 loadEData 31.667 2.607 49.132 runEA 12.826 8.625 17.625 evalRandomGS 12.191 3.088 22.504 evalNrSigSets 3.190 0.086 5.179 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/GSEABenchmarkeR.Rcheck/00check.log’ for details.
GSEABenchmarkeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GSEABenchmarkeR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘GSEABenchmarkeR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSEABenchmarkeR)
GSEABenchmarkeR.Rcheck/GSEABenchmarkeR-Ex.timings
name | user | system | elapsed | |
bpPlot | 0.016 | 0.001 | 0.029 | |
cacheResource | 2.671 | 0.219 | 3.399 | |
evalNrSigSets | 3.190 | 0.086 | 5.179 | |
evalRandomGS | 12.191 | 3.088 | 22.504 | |
evalRelevance | 0.415 | 0.172 | 0.668 | |
evalTypeIError | 33.333 | 20.302 | 55.364 | |
loadEData | 31.667 | 2.607 | 49.132 | |
maPreproc | 2.069 | 0.183 | 3.600 | |
readDataId2diseaseCodeMap | 0.004 | 0.011 | 0.015 | |
readResults | 0.187 | 0.068 | 0.334 | |
runDE | 1.496 | 0.957 | 2.268 | |
runEA | 12.826 | 8.625 | 17.625 | |