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This page was generated on 2024-03-28 11:32:18 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4376 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 363/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Clomial 1.38.0 (landing page) Habil Zare
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the Clomial package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Clomial |
Version: 1.38.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Clomial.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Clomial_1.38.0.tar.gz |
StartedAt: 2024-03-27 08:56:09 -0400 (Wed, 27 Mar 2024) |
EndedAt: 2024-03-27 08:58:08 -0400 (Wed, 27 Mar 2024) |
EllapsedTime: 119.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Clomial.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Clomial.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Clomial_1.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/Clomial.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Clomial/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Clomial’ version ‘1.38.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Clomial’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Clomial: no visible global function definition for ‘runif’ Clomial.generate.data: no visible global function definition for ‘runif’ Clomial.generate.data: no visible global function definition for ‘rbinom’ Clomial.likelihood: no visible global function definition for ‘dbinom’ Phi: no visible global function definition for ‘dbinom’ choose.best: no visible global function definition for ‘tail’ compute.P.reparam : update.Wj: no visible global function definition for ‘optim’ compute.q: no visible global function definition for ‘dbinom’ Undefined global functions or variables: dbinom optim rbinom runif tail Consider adding importFrom("stats", "dbinom", "optim", "rbinom", "runif") importFrom("utils", "tail") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed choose.best 24.278 5.253 30.699 Clomial-package 9.069 1.561 11.050 Clomial 8.950 1.538 10.919 compute.bic 6.170 1.630 8.158 Clomial.iterate 4.511 0.772 5.465 Clomial.likelihood 4.447 0.772 5.392 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/Clomial.Rcheck/00check.log’ for details.
Clomial.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Clomial ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘Clomial’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Clomial)
Clomial.Rcheck/Clomial-Ex.timings
name | user | system | elapsed | |
Clomial-package | 9.069 | 1.561 | 11.050 | |
Clomial | 8.950 | 1.538 | 10.919 | |
Clomial.generate.data | 0.033 | 0.001 | 0.034 | |
Clomial.iterate | 4.511 | 0.772 | 5.465 | |
Clomial.likelihood | 4.447 | 0.772 | 5.392 | |
Clomial1000 | 0.229 | 0.011 | 0.258 | |
breastCancer | 0.002 | 0.003 | 0.004 | |
choose.best | 24.278 | 5.253 | 30.699 | |
compute.bic | 6.170 | 1.630 | 8.158 | |
compute.errors | 2.705 | 0.639 | 3.500 | |