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This page was generated on 2024-04-18 11:32:08 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 445/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COTAN 2.2.4  (landing page)
Galfrè Silvia Giulia
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/COTAN
git_branch: RELEASE_3_18
git_last_commit: a8c56b7
git_last_commit_date: 2024-04-04 17:23:05 -0400 (Thu, 04 Apr 2024)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for COTAN on kjohnson1


To the developers/maintainers of the COTAN package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COTAN
Version: 2.2.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
StartedAt: 2024-04-16 16:14:52 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 16:16:09 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 77.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COTAN
###
##############################################################################
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* checking for file ‘COTAN/DESCRIPTION’ ... OK
* preparing ‘COTAN’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2861nnn/GSM2861514/suppl//GSM2861514_E175_Only_Cortical_Cells_DGE.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 1509523 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

2024-04-16 16:16:02.515 R[76391:449162944] XType: Using static font registry.

Quitting from lines 170-177 [unnamed-chunk-15] (Guided_tutorial_v2.Rmd)
Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘Guided_tutorial_v2.Rmd’

SUMMARY: processing the following file failed:
  ‘Guided_tutorial_v2.Rmd’

Error: Vignette re-building failed.
Execution halted