| Back to Workflows build report for BioC 3.17 |
This page was generated on 2023-10-13 14:00:09 -0400 (Fri, 13 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| maEndToEnd 2.20.1 (landing page) Stefanie Reisenauer
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK |  | |||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | TIMEOUT | |||||||||
|
To the developers/maintainers of the maEndToEnd package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maEndToEnd |
| Version: 2.20.1 |
| Command: chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd |
| StartedAt: 2023-10-13 11:06:40 -0400 (Fri, 13 Oct 2023) |
| EndedAt: 2023-10-13 11:49:30 -0400 (Fri, 13 Oct 2023) |
| EllapsedTime: 2570.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd ### ############################################################################## ############################################################################## * checking for file 'maEndToEnd/DESCRIPTION' ... OK * preparing 'maEndToEnd': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'MA-Workflow.Rmd' using rmarkdown trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/164_I_.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/164_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/183_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/183_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2114_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2114_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2209_A.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2209_B.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2255_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2255_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2400_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2400_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2424_A.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2424_B.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/255_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/255_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2826_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2826_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2853_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2853_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2978_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2978_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2987_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2987_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2992_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2992_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2995_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/2995_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/321_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/321_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3222_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3222_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3223_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3223_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3226_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3226_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3233_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3233_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3258_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3258_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3259_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3259_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3262_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3262_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3266_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3266_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3269_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3269_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3271_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3271_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3302_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3302_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3332_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/3332_II.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/848_A.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/848_B.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/888_I.CEL' trying URL 'ftp://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/888_II.CEL' trying URL 'https://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/E-MTAB-2967.sdrf.txt' Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB) ================================================== downloaded 21 KB Quitting from lines 400-404 [importCelfiles] (MA-Workflow.Rmd) Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics: These do not exist: F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/164_I_.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/164_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/183_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/183_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2114_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2114_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2209_A.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2209_B.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2255_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2255_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2400_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2400_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2424_A.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2424_B.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/255_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/255_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2826_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2826_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2853_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2853_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2978_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2978_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2987_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2987_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2992_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2992_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2995_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/2995_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/321_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/321_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3222_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3222_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3223_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3223_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3226_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3226_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3233_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3233_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3258_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3258_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3259_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3259_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3262_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3262_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3266_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3266_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3269_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3269_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3271_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3271_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3302_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3302_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3332_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/3332_II.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/848_A.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/848_B.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/888_I.CEL F:\biocbuild\bbs-3.17-workflows\tmpdir\RtmpGAhVpO/888_II.CEL --- failed re-building 'MA-Workflow.Rmd' SUMMARY: processing the following file failed: 'MA-Workflow.Rmd' Error: Vignette re-building failed. Execution halted