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This page was generated on 2023-04-12 10:55:42 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for supraHex on nebbiolo2


To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2022/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.37.0  (landing page)
Hai Fang
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: devel
git_last_commit: a854df8
git_last_commit_date: 2022-11-01 11:08:35 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  

Summary

Package: supraHex
Version: 1.37.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings supraHex_1.37.0.tar.gz
StartedAt: 2023-04-12 09:47:38 -0400 (Wed, 12 Apr 2023)
EndedAt: 2023-04-12 09:49:00 -0400 (Wed, 12 Apr 2023)
EllapsedTime: 82.3 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings supraHex_1.37.0.tar.gz
###
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##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2023-02-14 r83833)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
    GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
* running under: Ubuntu 20.04.6 LTS
* using session charset: UTF-8
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘supraHex_vignettes.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0600.0160.075
sCompReorder2.4120.1562.568
sDistance0.3090.0000.309
sDmat0.3270.0000.328
sDmatCluster0.4990.0000.499
sDmatMinima0.3550.0000.356
sHexDist0.0070.0000.007
sHexGrid0.0010.0000.002
sHexGridVariant0.0010.0000.001
sHexPolygon0.1120.0000.112
sInitial0.0070.0000.007
sMapOverlay0.3760.0280.403
sNeighAny0.0110.0000.011
sNeighDirect0.0130.0000.013
sPipeline0.0000.0000.001
sTopology0.0350.0000.035
sTrainBatch0.0410.0000.041
sTrainSeq0.2870.0080.295
sTrainology0.0070.0000.006
sWriteData0.7020.0480.761
visColoralpha0.0050.0000.006
visColorbar0.0380.0000.038
visColormap0.0060.0000.006
visCompReorder3.1820.1283.311
visDmatCluster000
visDmatHeatmap000
visHeatmap0.0770.0000.077
visHeatmapAdv0.3080.0000.308
visHexAnimate0.0010.0000.001
visHexBarplot0.7350.0240.758
visHexComp0.2780.0000.278
visHexGrid0.2760.0040.280
visHexMapping1.4380.0001.439
visHexMulComp1.0110.0161.027
visHexPattern1.7130.0481.761
visKernels0.0090.0040.013
visTreeBSclust0.0010.0000.001
visTreeBootstrap0.0000.0000.001
visVp0.0150.0000.015