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This page was generated on 2023-04-12 10:55:26 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for maSigPro on nebbiolo1


To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1112/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.71.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: devel
git_last_commit: 62a0aeb
git_last_commit_date: 2022-11-01 10:40:03 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  

Summary

Package: maSigPro
Version: 1.71.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings maSigPro_1.71.0.tar.gz
StartedAt: 2023-04-11 21:18:53 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 21:21:14 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 140.7 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings maSigPro_1.71.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/maSigPro.Rcheck’
* using R version 4.3.0 alpha (2023-04-03 r84154)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.71.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
tableDS       12.190  0.008  12.198
getDSPatterns 11.237  0.001  11.238
seeDS         11.022  0.000  11.023
PodiumChange  10.992  0.004  10.997
IsoModel      10.799  0.123  10.923
IsoPlot       10.808  0.097  10.904
getDS         10.797  0.016  10.813
ISOdata       10.674  0.051  10.727
ISOdesign     10.484  0.004  10.489
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘maSigPro.Rnw’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata10.674 0.05110.727
ISOdesign10.484 0.00410.489
IsoModel10.799 0.12310.923
IsoPlot10.808 0.09710.904
NBdata0.0020.0000.001
NBdesign0.0010.0000.001
PlotGroups0.0240.0030.028
PlotProfiles0.0040.0000.004
PodiumChange10.992 0.00410.997
T.fit4.8420.0034.846
average.rows0.0020.0000.002
data.abiotic0.0040.0000.004
edesign.abiotic0.0020.0000.002
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes2.2530.0122.265
getDS10.797 0.01610.813
getDSPatterns11.237 0.00111.238
i.rank000
maSigProUsersGuide0.0010.0010.002
make.design.matrix0.0020.0100.011
p.vector1.5040.0081.512
position0.0000.0010.000
reg.coeffs000
see.genes0.5540.0080.561
seeDS11.022 0.00011.023
stepback0.0260.0000.025
stepfor0.080.000.08
suma2Venn0.0240.0000.026
tableDS12.190 0.00812.198
two.ways.stepback0.0710.0000.071
two.ways.stepfor0.0990.0000.100