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This page was generated on 2023-04-12 10:55:36 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 alpha (2023-04-03 r84154) 4547
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" 4333
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GeneSelectMMD on nebbiolo2


To the developers/maintainers of the GeneSelectMMD package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 781/2207HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.43.0  (landing page)
Weiliang Qiu
Snapshot Date: 2023-04-11 14:00:16 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/GeneSelectMMD
git_branch: devel
git_last_commit: d68e449
git_last_commit_date: 2022-11-01 11:04:22 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    WARNINGS  
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  

Summary

Package: GeneSelectMMD
Version: 2.43.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GeneSelectMMD
StartedAt: 2023-04-12 01:35:04 -0400 (Wed, 12 Apr 2023)
EndedAt: 2023-04-12 01:35:25 -0400 (Wed, 12 Apr 2023)
EllapsedTime: 20.3 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GeneSelectMMD
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0’
using Fortran compiler: ‘GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
gfortran  -fpic  -g -O2  -Wall -c Qfunc.f -o Qfunc.o
gfortran  -fpic  -g -O2  -Wall -c blas.f -o blas.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c isnan.c -o isnan.o
gfortran  -fpic  -g -O2  -Wall -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1409:0:

 1409 |      +                 tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
      | 
Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:0:

 1482 |                t(nbreak) = tl/(-neggi)
      | 
Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran  -fpic  -g -O2  -Wall -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran  -fpic  -g -O2  -Wall -c linpack.f -o linpack.o
gfortran  -fpic  -g -O2  -Wall -c llkhFun.f -o llkhFun.o
gfortran  -fpic  -g -O2  -Wall -c myTtest.f -o myTtest.o
gfortran  -fpic  -g -O2  -Wall -c paraEstLoop.f -o paraEstLoop.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c pt.c -o pt.o
gfortran  -fpic  -g -O2  -Wall -c timer.f -o timer.o
gfortran  -fpic  -g -O2  -Wall -c wiFun.f -o wiFun.o
gcc -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)