Back to Build/check report for BioC 3.17 experimental data |
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This page was generated on 2023-10-12 14:51:36 -0400 (Thu, 12 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 414/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
xcoredata 1.4.0 (landing page) Maciej Migdał
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the xcoredata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: xcoredata |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings xcoredata_1.4.0.tar.gz |
StartedAt: 2023-10-12 12:14:01 -0400 (Thu, 12 Oct 2023) |
EndedAt: 2023-10-12 12:19:51 -0400 (Thu, 12 Oct 2023) |
EllapsedTime: 349.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: xcoredata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings xcoredata_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/xcoredata.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘xcoredata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘xcoredata’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘xcoredata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed chip_atlas_promoters_f5 38.493 1.904 40.483 remap_promoters_f5 34.775 1.520 36.389 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘xcoredata.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
xcoredata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL xcoredata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘xcoredata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xcoredata)
xcoredata.Rcheck/xcoredata-Ex.timings
name | user | system | elapsed | |
chip_atlas_meta | 1.116 | 0.636 | 1.924 | |
chip_atlas_promoters_f5 | 38.493 | 1.904 | 40.483 | |
entrez2fantom | 1.362 | 0.480 | 2.040 | |
promoters_f5 | 2.208 | 0.084 | 2.380 | |
promoters_f5_core | 0.950 | 0.060 | 1.102 | |
remap_meta | 0.880 | 0.292 | 1.260 | |
remap_promoters_f5 | 34.775 | 1.520 | 36.389 | |
symbol2fantom | 0.892 | 0.476 | 1.515 | |