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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 275/421HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.12.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_17
git_last_commit: 4dee21f
git_last_commit_date: 2023-04-25 10:48:36 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for optimalFlowData on nebbiolo1


To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.12.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings optimalFlowData_1.12.0.tar.gz
StartedAt: 2023-10-12 11:48:49 -0400 (Thu, 12 Oct 2023)
EndedAt: 2023-10-12 11:49:50 -0400 (Thu, 12 Oct 2023)
EllapsedTime: 61.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings optimalFlowData_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.1Mb
  sub-directories of 1Mb or more:
    data  100.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘optimalFlowData_vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0390.0080.048
Cytometry100.0360.0040.040
Cytometry110.0360.0030.040
Cytometry120.0360.0040.040
Cytometry130.0390.0080.047
Cytometry140.0480.0120.059
Cytometry150.0210.0010.022
Cytometry160.0180.0030.022
Cytometry170.0630.0320.094
Cytometry180.0540.0250.079
Cytometry190.0350.0030.038
Cytometry20.0680.0040.072
Cytometry200.0650.0000.065
Cytometry210.0780.0040.082
Cytometry220.0340.0030.037
Cytometry230.0330.0000.033
Cytometry240.0360.0010.035
Cytometry250.0330.0000.034
Cytometry260.0350.0000.035
Cytometry270.0910.0110.102
Cytometry280.0900.0170.106
Cytometry290.1010.0070.108
Cytometry30.0210.0000.021
Cytometry300.0790.0120.091
Cytometry310.0740.0010.074
Cytometry320.0830.0000.082
Cytometry330.0460.0000.045
Cytometry340.1250.0030.129
Cytometry350.0630.0030.067
Cytometry360.020.000.02
Cytometry370.0140.0030.019
Cytometry380.0140.0040.018
Cytometry390.0180.0010.018
Cytometry40.0210.0000.020
Cytometry400.0420.0030.046
Cytometry50.0190.0000.020
Cytometry60.0180.0000.019
Cytometry70.0140.0030.018
Cytometry80.020.000.02
Cytometry90.0330.0010.033
buildDatabase0.6550.0190.675
cytometry.diagnosis0.0020.0000.002
noise.types0.0020.0000.001