Back to Build/check report for BioC 3.17 experimental data |
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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 233/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
methylclockData 1.8.1 (landing page) Dolors Pelegri-Siso
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the methylclockData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: methylclockData |
Version: 1.8.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings methylclockData_1.8.1.tar.gz |
StartedAt: 2023-10-12 11:38:55 -0400 (Thu, 12 Oct 2023) |
EndedAt: 2023-10-12 11:44:02 -0400 (Thu, 12 Oct 2023) |
EllapsedTime: 306.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: methylclockData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings methylclockData_1.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/methylclockData.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘methylclockData/DESCRIPTION’ ... OK * this is package ‘methylclockData’ version ‘1.8.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘methylclockData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘methylcockData.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-data-experiment/meat/methylclockData.Rcheck/00check.log’ for details.
methylclockData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL methylclockData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘methylclockData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ExperimentHubData’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ExperimentHubData’ ** testing if installed package can be loaded from final location Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘ExperimentHubData’ ** testing if installed package keeps a record of temporary installation path * DONE (methylclockData)
methylclockData.Rcheck/methylclockData-Ex.timings
name | user | system | elapsed | |
get_MethylationDataExample | 1.84 | 0.16 | 2.46 | |
get_TestDataset | 1.299 | 0.305 | 1.889 | |
get_coefBLUP | 1.967 | 0.244 | 2.497 | |
get_coefBohlin | 1.146 | 0.148 | 1.574 | |
get_coefEN | 2.027 | 0.375 | 2.706 | |
get_coefEPIC | 1.197 | 0.144 | 1.640 | |
get_coefHannum | 1.307 | 0.244 | 1.840 | |
get_coefHorvath | 1.159 | 0.148 | 1.598 | |
get_coefKnightGA | 1.377 | 0.189 | 1.854 | |
get_coefLeeGA | 1.179 | 0.204 | 1.672 | |
get_coefLevine | 1.305 | 0.216 | 1.811 | |
get_coefMayneGA | 1.303 | 0.103 | 1.613 | |
get_coefPedBE | 1.269 | 0.100 | 1.690 | |
get_coefSkin | 1.288 | 0.152 | 1.734 | |
get_coefTL | 1.217 | 0.120 | 1.634 | |
get_coefWu | 1.299 | 0.168 | 1.751 | |
get_cpgs_bn | 1.144 | 0.128 | 1.593 | |
get_probeAnnotation21kdatMethUsed | 1.339 | 0.136 | 1.764 | |
get_references | 1.200 | 0.131 | 1.672 | |