Back to Build/check report for BioC 3.17 experimental data
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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 56/421HostnameOS / ArchINSTALLBUILDCHECK
chipenrich.data 2.24.0  (landing page)
Kai Wang
Snapshot Date: 2023-10-12 07:30:02 -0400 (Thu, 12 Oct 2023)
git_url: https://git.bioconductor.org/packages/chipenrich.data
git_branch: RELEASE_3_17
git_last_commit: 6bbc9b9
git_last_commit_date: 2023-04-25 10:34:04 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

BUILD results for chipenrich.data on nebbiolo1


To the developers/maintainers of the chipenrich.data package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: chipenrich.data
Version: 2.24.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data chipenrich.data
StartedAt: 2023-10-12 10:16:53 -0400 (Thu, 12 Oct 2023)
EndedAt: 2023-10-12 10:19:11 -0400 (Thu, 12 Oct 2023)
EllapsedTime: 137.7 seconds
RetCode: 0
Status:   OK  
PackageFile: chipenrich.data_2.24.0.tar.gz
PackageFileSize: 105.6 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data chipenrich.data
###
##############################################################################
##############################################################################


* checking for file ‘chipenrich.data/DESCRIPTION’ ... OK
* preparing ‘chipenrich.data’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
Warning: ‘inst/doc’ files
    ‘chipenrich.data-vignette.Rmd’, ‘chipenrich.data-vignette.html’,  ‘chipenrich.data-vignette.R’
  ignored as vignettes have been rebuilt.
  Run R CMD build with --no-build-vignettes to prevent rebuilding.
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘chipenrich.data/data/enhancer.dnase_thurman.0.RData’
    ‘chipenrich.data/data/enhancer.hg19.RData’
    ‘chipenrich.data/data/enhancer.hg38.RData’
    ‘chipenrich.data/data/enhancer.mm10.RData’
    ‘chipenrich.data/data/enhancer.mm9.RData’
    ‘chipenrich.data/data/gene.enh.desc.hg19.RData’
    ‘chipenrich.data/data/gene.enh.desc.mm10.RData’
    ‘chipenrich.data/data/gene.enh.desc.mm9.RData’
    ‘chipenrich.data/data/geneset.cellType.hsa.RData’
    ‘chipenrich.data/data/geneset.hallmark.hsa.RData’
    ‘chipenrich.data/data/geneset.immunologic.hsa.RData’
    ‘chipenrich.data/data/geneset.oncogenic.hsa.RData’
    ‘chipenrich.data/data/locusdef.danRer10.10kb.RData’
    ‘chipenrich.data/data/locusdef.danRer10.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.danRer10.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.danRer10.1kb.RData’
    ‘chipenrich.data/data/locusdef.danRer10.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.danRer10.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.danRer10.5kb.RData’
    ‘chipenrich.data/data/locusdef.danRer10.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.danRer10.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.danRer10.exon.RData’
    ‘chipenrich.data/data/locusdef.danRer10.intron.RData’
    ‘chipenrich.data/data/locusdef.danRer10.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.danRer10.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.dm3.10kb.RData’
    ‘chipenrich.data/data/locusdef.dm3.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm3.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm3.1kb.RData’
    ‘chipenrich.data/data/locusdef.dm3.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm3.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm3.5kb.RData’
    ‘chipenrich.data/data/locusdef.dm3.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm3.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm3.exon.RData’
    ‘chipenrich.data/data/locusdef.dm3.intron.RData’
    ‘chipenrich.data/data/locusdef.dm3.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.dm3.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.dm6.10kb.RData’
    ‘chipenrich.data/data/locusdef.dm6.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm6.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm6.1kb.RData’
    ‘chipenrich.data/data/locusdef.dm6.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm6.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm6.5kb.RData’
    ‘chipenrich.data/data/locusdef.dm6.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.dm6.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.dm6.exon.RData’
    ‘chipenrich.data/data/locusdef.dm6.intron.RData’
    ‘chipenrich.data/data/locusdef.dm6.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.dm6.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.hg19.10kb.RData’
    ‘chipenrich.data/data/locusdef.hg19.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg19.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg19.1kb.RData’
    ‘chipenrich.data/data/locusdef.hg19.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg19.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg19.5kb.RData’
    ‘chipenrich.data/data/locusdef.hg19.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg19.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg19.enhancer.RData’
    ‘chipenrich.data/data/locusdef.hg19.enhancer_plus5kb.RData’
    ‘chipenrich.data/data/locusdef.hg19.exon.RData’
    ‘chipenrich.data/data/locusdef.hg19.intron.RData’
    ‘chipenrich.data/data/locusdef.hg19.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.hg19.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.hg38.10kb.RData’
    ‘chipenrich.data/data/locusdef.hg38.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg38.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg38.1kb.RData’
    ‘chipenrich.data/data/locusdef.hg38.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg38.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg38.5kb.RData’
    ‘chipenrich.data/data/locusdef.hg38.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.hg38.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.hg38.enhancer.RData’
    ‘chipenrich.data/data/locusdef.hg38.enhancer_plus5kb.RData’
    ‘chipenrich.data/data/locusdef.hg38.exon.RData’
    ‘chipenrich.data/data/locusdef.hg38.intron.RData’
    ‘chipenrich.data/data/locusdef.hg38.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.hg38.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.mm10.10kb.RData’
    ‘chipenrich.data/data/locusdef.mm10.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm10.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm10.1kb.RData’
    ‘chipenrich.data/data/locusdef.mm10.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm10.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm10.5kb.RData’
    ‘chipenrich.data/data/locusdef.mm10.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm10.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm10.exon.RData’
    ‘chipenrich.data/data/locusdef.mm10.intron.RData’
    ‘chipenrich.data/data/locusdef.mm10.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.mm10.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.mm9.10kb.RData’
    ‘chipenrich.data/data/locusdef.mm9.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm9.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm9.1kb.RData’
    ‘chipenrich.data/data/locusdef.mm9.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm9.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm9.5kb.RData’
    ‘chipenrich.data/data/locusdef.mm9.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.mm9.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.mm9.exon.RData’
    ‘chipenrich.data/data/locusdef.mm9.intron.RData’
    ‘chipenrich.data/data/locusdef.mm9.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.mm9.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.rn4.10kb.RData’
    ‘chipenrich.data/data/locusdef.rn4.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn4.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn4.1kb.RData’
    ‘chipenrich.data/data/locusdef.rn4.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn4.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn4.5kb.RData’
    ‘chipenrich.data/data/locusdef.rn4.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn4.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn4.exon.RData’
    ‘chipenrich.data/data/locusdef.rn4.intron.RData’
    ‘chipenrich.data/data/locusdef.rn4.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.rn4.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.rn5.10kb.RData’
    ‘chipenrich.data/data/locusdef.rn5.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn5.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn5.1kb.RData’
    ‘chipenrich.data/data/locusdef.rn5.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn5.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn5.5kb.RData’
    ‘chipenrich.data/data/locusdef.rn5.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn5.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn5.exon.RData’
    ‘chipenrich.data/data/locusdef.rn5.intron.RData’
    ‘chipenrich.data/data/locusdef.rn5.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.rn5.nearest_tss.RData’
    ‘chipenrich.data/data/locusdef.rn6.10kb.RData’
    ‘chipenrich.data/data/locusdef.rn6.10kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn6.10kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn6.1kb.RData’
    ‘chipenrich.data/data/locusdef.rn6.1kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn6.1kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn6.5kb.RData’
    ‘chipenrich.data/data/locusdef.rn6.5kb_outside.RData’
    ‘chipenrich.data/data/locusdef.rn6.5kb_outside_upstream.RData’
    ‘chipenrich.data/data/locusdef.rn6.exon.RData’
    ‘chipenrich.data/data/locusdef.rn6.intron.RData’
    ‘chipenrich.data/data/locusdef.rn6.nearest_gene.RData’
    ‘chipenrich.data/data/locusdef.rn6.nearest_tss.RData’
    ‘chipenrich.data/data/tss.danRer10.RData’
    ‘chipenrich.data/data/tss.dm3.RData’
    ‘chipenrich.data/data/tss.dm6.RData’
    ‘chipenrich.data/data/tss.hg19.RData’
    ‘chipenrich.data/data/tss.hg38.RData’
    ‘chipenrich.data/data/tss.mm10.RData’
    ‘chipenrich.data/data/tss.mm9.RData’
    ‘chipenrich.data/data/tss.rn4.RData’
    ‘chipenrich.data/data/tss.rn5.RData’
    ‘chipenrich.data/data/tss.rn6.RData’
* building ‘chipenrich.data_2.24.0.tar.gz’