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This page was generated on 2023-01-02 09:00:51 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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INSTALL results for sigPathway on palomino5


To the developers/maintainers of the sigPathway package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1853/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sigPathway 1.67.1  (landing page)
Weil Lai
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/sigPathway
git_branch: master
git_last_commit: 97316df
git_last_commit_date: 2022-12-07 07:42:59 -0500 (Wed, 07 Dec 2022)
palomino5Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped

Summary

Package: sigPathway
Version: 1.67.1
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL sigPathway
StartedAt: 2022-12-28 15:30:22 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 15:30:36 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 14.1 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL sigPathway
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'sigPathway' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calc_probe_stat.c -o calc_probe_stat.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calc_weights.c -o calc_weights.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c matrix_fn.c -o matrix_fn.o
In file included from F:/biocbuild/bbs-3.17-bioc/R/include/R.h:78,
                 from sigPathway.h:18,
                 from matrix_fn.c:13:
matrix_fn.c: In function 'matprod':
matrix_fn.c:28:16: error: too few arguments to function 'dgemm_'
   28 |       F77_CALL(dgemm)(transa, transb, &nrx, &ncy, &ncx, &one,
      |                ^~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:10: note: declared here
  207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
      |          ^~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:207:1: note: in expansion of macro 'F77_NAME'
  207 | F77_NAME(dgemm)(const char *transa, const char *transb, const int *m,
      | ^~~~~~~~
matrix_fn.c: In function 'eigen':
matrix_fn.c:65:12: error: too few arguments to function 'dsyevr_'
   65 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |            ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1270:10: note: declared here
 1270 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      |          ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1270:1: note: in expansion of macro 'F77_NAME'
 1270 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      | ^~~~~~~~
matrix_fn.c:77:12: error: too few arguments to function 'dsyevr_'
   77 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |            ^~~~~~
matrix_fn.c:77:3: note: in expansion of macro 'F77_CALL'
   77 |   F77_CALL(dsyevr)(jobv, range, uplo, &n, rx, &n,
      |   ^~~~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1270:10: note: declared here
 1270 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      |          ^~~~~~
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro 'F77_CALL'
   77 | # define F77_CALL(x)    x ## _
      |                         ^
F:/biocbuild/bbs-3.17-bioc/R/include/R_ext/Lapack.h:1270:1: note: in expansion of macro 'F77_NAME'
 1270 | F77_NAME(dsyevr)(const char* jobz, const char* range, const char* uplo,
      | ^~~~~~~~
make: *** [F:/biocbuild/bbs-3.17-bioc/R/etc/x64/Makeconf:257: matrix_fn.o] Error 1
ERROR: compilation failed for package 'sigPathway'
* removing 'F:/biocbuild/bbs-3.17-bioc/R/library/sigPathway'