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This page was generated on 2023-01-02 09:00:47 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the rgoslin package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1647/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rgoslin 1.3.0 (landing page) Nils Hoffmann
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: rgoslin |
| Version: 1.3.0 |
| Command: rm -rf rgoslin.buildbin-libdir && mkdir rgoslin.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=rgoslin.buildbin-libdir rgoslin_1.3.0.tar.gz |
| StartedAt: 2022-12-29 05:37:43 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:39:57 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 134.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rgoslin_1.3.0.zip |
| PackageFileSize: 1.161 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rgoslin.buildbin-libdir && mkdir rgoslin.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=rgoslin.buildbin-libdir rgoslin_1.3.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'rgoslin' ... ** using staged installation ** libs using C++ compiler: 'G__~1.EXE (GCC) 12.2.0' using C++11 The name of the shared library to be created is: rgoslin.dll make[1]: Entering directory '/f/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpCUAMv4/R.INSTALL81c8185b5a/rgoslin/src/cppgoslin' rm -f "cppgoslin/parser/KnownGrammars.h" rm -f "src/domain/LipidClasses.cpp" rm -f "cppgoslin/domain/ClassesEnum.h" rm -f cppgoslin/domain/*.o rm -f cppgoslin/parser/*.o rm -f cppgoslin/tests/*.o rm -f libcppGoslin.so rm -f *Test rm -f writeGrammarsHeader rm -f writeLipidEnums rm -f libcppGoslin.a make[1]: Leaving directory '/f/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpCUAMv4/R.INSTALL81c8185b5a/rgoslin/src/cppgoslin' make[1]: Entering directory '/f/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpCUAMv4/R.INSTALL81c8185b5a/rgoslin/src/cppgoslin' g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeGrammarsHeader writeGrammarsHeader.cpp && ./writeGrammarsHeader "cppgoslin/parser/KnownGrammars.h" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I . -o writeLipidEnums writeLipidEnums.cpp src/domain/StringFunctions.cpp src/parser/SumFormulaParserEventHandler.cpp src/parser/ParserClasses.cpp && ./writeLipidEnums "src/domain/LipidClasses.cpp" g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Adduct.o -c src/domain/Adduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidMolecularSpecies.o -c src/domain/LipidMolecularSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSnPosition.o -c src/domain/LipidSnPosition.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidStructureDefined.o -c src/domain/LipidStructureDefined.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FattyAcid.o -c src/domain/FattyAcid.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidAdduct.o -c src/domain/LipidAdduct.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpecies.o -c src/domain/LipidSpecies.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidFullStructure.o -c src/domain/LipidFullStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidCompleteStructure.o -c src/domain/LipidCompleteStructure.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidSpeciesInfo.o -c src/domain/LipidSpeciesInfo.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/StringFunctions.o -c src/domain/StringFunctions.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/LipidClasses.o -c src/domain/LipidClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/DoubleBonds.o -c src/domain/DoubleBonds.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/FunctionalGroup.o -c src/domain/FunctionalGroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Headgroup.o -c src/domain/Headgroup.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/Cycle.o -c src/domain/Cycle.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/domain/GenericDatastructures.o -c src/domain/GenericDatastructures.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ParserClasses.o -c src/parser/ParserClasses.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/KnownParsers.o -c src/parser/KnownParsers.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/GoslinParserEventHandler.o -c src/parser/GoslinParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidMapsParserEventHandler.o -c src/parser/LipidMapsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SwissLipidsParserEventHandler.o -c src/parser/SwissLipidsParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/HmdbParserEventHandler.o -c src/parser/HmdbParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParserEventHandler.o -c src/parser/SumFormulaParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/SumFormulaParser.o -c src/parser/SumFormulaParser.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/ShorthandParserEventHandler.o -c src/parser/ShorthandParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/FattyAcidParserEventHandler.o -c src/parser/FattyAcidParserEventHandler.cpp g++ -std=gnu++11 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -fPIC -o src/parser/LipidBaseParserEventHandler.o -c src/parser/LipidBaseParserEventHandler.cpp ar rcs libcppGoslin.a src/domain/Adduct.o src/domain/LipidMolecularSpecies.o src/domain/LipidSnPosition.o src/domain/LipidStructureDefined.o src/domain/FattyAcid.o src/domain/LipidAdduct.o src/domain/LipidSpecies.o src/domain/LipidFullStructure.o src/domain/LipidCompleteStructure.o src/domain/LipidSpeciesInfo.o src/domain/StringFunctions.o src/domain/LipidClasses.o src/domain/DoubleBonds.o src/domain/FunctionalGroup.o src/domain/Headgroup.o src/domain/Cycle.o src/domain/GenericDatastructures.o src/parser/ParserClasses.o src/parser/KnownParsers.o src/parser/GoslinParserEventHandler.o src/parser/LipidMapsParserEventHandler.o src/parser/SwissLipidsParserEventHandler.o src/parser/HmdbParserEventHandler.o src/parser/SumFormulaParserEventHandler.o src/parser/SumFormulaParser.o src/parser/ShorthandParserEventHandler.o src/parser/FattyAcidParserEventHandler.o src/parser/LipidBaseParserEventHandler.o make[1]: Leaving directory '/f/biocbuild/bbs-3.17-bioc-rtools43/tmpdir/RtmpCUAMv4/R.INSTALL81c8185b5a/rgoslin/src/cppgoslin' g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"." -I"./cppgoslin" -I"./cppgoslin/cppgoslin" -I"./cppgoslin/cppgoslin/domain" -I"./cppgoslin/cppgoslin/parser" -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rgoslin.cpp -o rgoslin.o g++ -shared -s -static-libgcc -o rgoslin.dll tmp.def RcppExports.o rgoslin.o cppgoslin/libcppGoslin.a -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/rgoslin.buildbin-libdir/00LOCK-rgoslin/00new/rgoslin/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'rgoslin' as rgoslin_1.3.0.zip * DONE (rgoslin)