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This page was generated on 2023-01-02 09:00:39 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for miRspongeR on palomino5


To the developers/maintainers of the miRspongeR package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1207/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRspongeR 2.3.0  (landing page)
Junpeng Zhang
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/miRspongeR
git_branch: master
git_last_commit: 8a9e99e
git_last_commit_date: 2022-11-01 11:16:09 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: miRspongeR
Version: 2.3.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL miRspongeR
StartedAt: 2022-12-28 16:28:21 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 16:28:57 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 35.1 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL miRspongeR
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'miRspongeR' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c complex.c -o complex.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
/bin/sh: -c: line 1: unexpected EOF while looking for matching `"'
gcc -shared -s -static-libgcc -o miRspongeR.dll tmp.def complex.o registerDynamicSymbol.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-miRspongeR/00new/miRspongeR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package keeps a record of temporary installation path
* DONE (miRspongeR)