Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:25 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the cyanoFilter package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 450/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.7.0 (landing page) Oluwafemi Olusoji
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: cyanoFilter |
Version: 1.7.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cyanoFilter.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings cyanoFilter_1.7.0.tar.gz |
StartedAt: 2022-12-28 22:56:47 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 22:58:20 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 93.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cyanoFilter.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings cyanoFilter_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/cyanoFilter.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'cyanoFilter/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cyanoFilter' version '1.7.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cyanoFilter' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 10.61 0.07 10.74 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'cyanoFilter' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.82 | 0.27 | 2.11 | |
PhytoFilter | 0.79 | 0.07 | 0.94 | |
PhytopFilter | 0.55 | 0.13 | 0.76 | |
accTest | 0.56 | 0.06 | 0.66 | |
accuracy | 0.25 | 0.08 | 0.33 | |
cellmargin | 0.29 | 0.03 | 0.36 | |
clusterExtract | 0.70 | 0.11 | 0.88 | |
clusterExtractp | 0.95 | 0.08 | 1.06 | |
debrisNc | 0.31 | 0.06 | 0.40 | |
fullFlowframe-MarginEvents-method | 0.29 | 0.06 | 0.38 | |
fullFlowframe-PhytopFilter-method | 0.92 | 0.02 | 0.97 | |
fullFlowframe | 0.26 | 0.05 | 0.37 | |
gateFunc | 10.61 | 0.07 | 10.74 | |
ggpairsDens | 2.47 | 0.21 | 2.87 | |
ggplotDens | 0.53 | 0.04 | 0.60 | |
ggplotDens2 | 0.77 | 0.02 | 0.86 | |
goodfcs | 0.05 | 0.00 | 0.04 | |
is.DebrisFilter | 0 | 0 | 0 | |
is.MarginEvents | 0 | 0 | 0 | |
is.PhytopFilter | 0 | 0 | 0 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0 | 0 | 0 | |
lnTrans | 0.20 | 0.02 | 0.25 | |
newFlowframe | 0.23 | 0.04 | 0.30 | |
nona | 0.10 | 0.00 | 0.11 | |
noneg | 0.17 | 0.00 | 0.19 | |
oneDgate | 0.22 | 0.03 | 0.26 | |
pairsPlot | 1.86 | 0.02 | 1.90 | |
pigmentGate | 0.28 | 0.03 | 0.36 | |
reducedFlowframe-MarginEvents-method | 0.28 | 0.08 | 0.39 | |
reducedFlowframe | 0.30 | 0.05 | 0.36 | |
retain | 0.02 | 0.00 | 0.02 | |
rowNumbers | 0.20 | 0.03 | 0.26 | |
summaries-DebrisFilter-method | 0.53 | 0.03 | 0.63 | |
summaries-MarginEvents-method | 0.27 | 0.05 | 0.34 | |
summaries-PhytopFilter-method | 0.53 | 0.06 | 0.64 | |
summaries | 0.26 | 0.04 | 0.35 | |