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This page was generated on 2023-01-02 09:00:18 -0500 (Mon, 02 Jan 2023).

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palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD BIN results for affyio on palomino5


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raw results

Package 27/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affyio 1.69.0  (landing page)
Ben Bolstad
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/affyio
git_branch: master
git_last_commit: fbee11e
git_last_commit_date: 2022-11-01 10:35:15 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: affyio
Version: 1.69.0
Command: rm -rf affyio.buildbin-libdir && mkdir affyio.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=affyio.buildbin-libdir affyio_1.69.0.tar.gz
StartedAt: 2022-12-29 04:48:44 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 04:49:01 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 16.9 seconds
RetCode: 0
Status:   OK  
PackageFile: affyio_1.69.0.zip
PackageFileSize: 93.43 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf affyio.buildbin-libdir && mkdir affyio.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=affyio.buildbin-libdir affyio_1.69.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'affyio' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c fread_functions.c -o fread_functions.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init_package.c -o init_package.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_abatch.c -o read_abatch.o
read_abatch.c: In function 'binary_get_detailed_header_info':
read_abatch.c:2661:3: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
 2661 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_abatch.c:2661:65: note: length computed here
 2661 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
      |                                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_abatch.c: In function 'gzbinary_get_detailed_header_info':
read_abatch.c:3410:3: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
 3410 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_abatch.c:3410:65: note: length computed here
 3410 |   strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1);
      |                                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPHeader':
read_bpmap.c:110:18: warning: overflow in conversion from 'long long unsigned int' to 'long int' changes value from '18446744073709551612' to '-4' [-Woverflow]
  110 |     fseek(infile,-sizeof(float),SEEK_CUR);
      |                  ^~~~~~~~~~~~~~
read_bpmap.c: In function 'ReadBPMAPFileIntoRList':
read_bpmap.c:698:27: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
  698 |           sprintf(buf, "%d", j+1);
      |                           ^
In function 'readBPMAPSeqIdPositionInfo',
    inlined from 'ReadBPMAPFileIntoRList' at read_bpmap.c:873:3:
read_bpmap.c:698:11: note: 'sprintf' output between 2 and 11 bytes into a destination of size 10
  698 |           sprintf(buf, "%d", j+1);
      |           ^~~~~~~~~~~~~~~~~~~~~~~
read_bpmap.c: In function 'ReadBPMAPFileIntoRList':
read_bpmap.c:655:27: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
  655 |           sprintf(buf, "%d", j+1);
      |                           ^
In function 'readBPMAPSeqIdPositionInfo',
    inlined from 'ReadBPMAPFileIntoRList' at read_bpmap.c:873:3:
read_bpmap.c:655:11: note: 'sprintf' output between 2 and 11 bytes into a destination of size 10
  655 |           sprintf(buf, "%d", j+1);
      |           ^~~~~~~~~~~~~~~~~~~~~~~
read_bpmap.c: In function 'ReadBPMAPFileIntoRList':
read_bpmap.c:603:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
  603 |         sprintf(buf, "%d", j+1);
      |                         ^
In function 'readBPMAPSeqIdPositionInfo',
    inlined from 'ReadBPMAPFileIntoRList' at read_bpmap.c:873:3:
read_bpmap.c:603:9: note: 'sprintf' output between 2 and 11 bytes into a destination of size 10
  603 |         sprintf(buf, "%d", j+1);
      |         ^~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_cdf_xda.c -o read_cdf_xda.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_cdffile2.c -o read_cdffile2.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'generic_get_detailed_header_info':
read_celfile_generic.c:272:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  272 |   strncpy(header_info->AlgorithmParameters,"Percentile:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:294:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  294 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:315:3: warning: 'strncpy' output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  315 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:336:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  336 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:357:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  357 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:378:3: warning: 'strncpy' output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
  378 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:399:3: warning: 'strncpy' output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
  399 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:420:3: warning: 'strncpy' output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  420 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:441:3: warning: 'strncpy' output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
  441 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:464:3: warning: 'strncpy' output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
  464 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:488:3: warning: 'strncpy' output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  488 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:510:3: warning: 'strncpy' output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
  510 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:532:3: warning: 'strncpy' output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
  532 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:553:3: warning: 'strncpy' output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
  553 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:575:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
  575 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:597:3: warning: 'strncpy' output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
  597 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c: In function 'gzgeneric_get_detailed_header_info':
read_celfile_generic.c:1270:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
 1270 |   strncpy(header_info->AlgorithmParameters,"Percentile:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1292:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
 1292 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1313:3: warning: 'strncpy' output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
 1313 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1334:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
 1334 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1355:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
 1355 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1376:3: warning: 'strncpy' output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation]
 1376 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1397:3: warning: 'strncpy' output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
 1397 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1418:3: warning: 'strncpy' output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
 1418 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1439:3: warning: 'strncpy' output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation]
 1439 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1462:3: warning: 'strncpy' output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation]
 1462 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1486:3: warning: 'strncpy' output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
 1486 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1508:3: warning: 'strncpy' output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation]
 1508 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1530:3: warning: 'strncpy' output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation]
 1530 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1551:3: warning: 'strncpy' output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation]
 1551 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1573:3: warning: 'strncpy' output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation]
 1573 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_celfile_generic.c:1595:3: warning: 'strncpy' output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation]
 1595 |   strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_clf.c -o read_clf.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_generic.c -o read_generic.o
read_generic.c: In function 'print_decode_nvt_triplet':
read_generic.c:1293:5: warning: 'temp32' may be used uninitialized [-Wmaybe-uninitialized]
 1293 |     Rprintf("Its a float  value is %f\n",temp32);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
read_generic.c:1283:7: note: 'temp32' declared here
 1283 |   int temp32;
      |       ^~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -DHAVE_ZLIB    -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c read_pgf.c -o read_pgf.o
read_pgf.c:363:12: warning: 'token_ends_with' defined but not used [-Wunused-function]
  363 | static int token_ends_with(char *token, char *ends_in){
      |            ^~~~~~~~~~~~~~~
gcc -shared -s -static-libgcc -o affyio.dll tmp.def fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -LF:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/affyio.buildbin-libdir/00LOCK-affyio/00new/affyio/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'affyio' as affyio_1.69.0.zip
* DONE (affyio)