| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-02 09:00:54 -0500 (Mon, 02 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TFBSTools package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2018/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFBSTools 1.37.0 (landing page) Ge Tan
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
| Package: TFBSTools |
| Version: 1.37.0 |
| Command: rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=TFBSTools.buildbin-libdir TFBSTools_1.37.0.tar.gz |
| StartedAt: 2022-12-29 05:51:02 -0500 (Thu, 29 Dec 2022) |
| EndedAt: 2022-12-29 05:52:05 -0500 (Thu, 29 Dec 2022) |
| EllapsedTime: 62.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: TFBSTools_1.37.0.zip |
| PackageFileSize: 1.636 MiB |
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### Running command:
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### rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=TFBSTools.buildbin-libdir TFBSTools_1.37.0.tar.gz
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* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized [-Wmaybe-uninitialized]
235 | while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
| ~~~~~~~~~~~~^~~~~~~~
matrixAlignerDynamic.c:115:17: note: 'best_pntr' was declared here
115 | struct entry *best_pntr; // pointer to the best entry so far
| ^~~~~~~~~
gcc -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_TFBSTools.c -o R_init_TFBSTools.o
gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/TFBSTools.buildbin-libdir/00LOCK-TFBSTools/00new/TFBSTools/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TFBSTools' as TFBSTools_1.37.0.zip
* DONE (TFBSTools)