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This page was generated on 2023-01-02 09:00:45 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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CHECK results for RandomWalkRestartMH on palomino5


To the developers/maintainers of the RandomWalkRestartMH package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1575/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RandomWalkRestartMH 1.19.0  (landing page)
Alberto Valdeolivas
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/RandomWalkRestartMH
git_branch: master
git_last_commit: e1b5798
git_last_commit_date: 2022-11-01 11:17:47 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: RandomWalkRestartMH
Version: 1.19.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RandomWalkRestartMH.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings RandomWalkRestartMH_1.19.0.tar.gz
StartedAt: 2022-12-29 02:37:10 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 02:38:20 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: RandomWalkRestartMH.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RandomWalkRestartMH.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings RandomWalkRestartMH_1.19.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RandomWalkRestartMH.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RandomWalkRestartMH/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RandomWalkRestartMH' version '1.19.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 3-1.png
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 4-1.png
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
Found the following non-portable file path:
  RandomWalkRestartMH/docs/articles/RandomWalkRestartMH_files/accessible-code-block-0.0.1/empty-anchor.js

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'RandomWalkRestartMH' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/RandomWalkRestartMH.Rcheck/00check.log'
for details.



Installation output

RandomWalkRestartMH.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL RandomWalkRestartMH
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'RandomWalkRestartMH' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RandomWalkRestartMH)

Tests output

RandomWalkRestartMH.Rcheck/tests/testthat.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RandomWalkRestartMH)
> 
> test_check("RandomWalkRestartMH")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
> 
> proc.time()
   user  system elapsed 
   2.79    0.40    3.17 

Example timings

RandomWalkRestartMH.Rcheck/RandomWalkRestartMH-Ex.timings

nameusersystemelapsed
Random.Walk.Restart.Multiplex0.280.000.28
Random.Walk.Restart.MultiplexHet0.130.020.14
compute.adjacency.matrix0.030.000.03
compute.transition.matrix0.050.000.05
create.multiplex000
create.multiplexHet0.030.000.03
create.multiplexHetNetwork.topResults0.090.000.10
create.multiplexNetwork.topResults0.060.000.06
isMultiplex000
isMultiplexHet0.020.000.02
isRWRMH_Results0.110.020.12
isRWRM_Results0.050.000.05
normalize.multiplex.adjacency000