Back to Mac ARM64 build report for BioC 3.17
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-10-20 09:38:05 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1093/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maanova 1.70.0  (landing page)
Keith Sheppard
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/maanova
git_branch: RELEASE_3_17
git_last_commit: 0efc12e
git_last_commit_date: 2023-04-25 09:42:24 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  ERROR    ERROR  skippedskipped

INSTALL results for maanova on kjohnson2


To the developers/maintainers of the maanova package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: maanova
Version: 1.70.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maanova
StartedAt: 2023-10-15 15:08:24 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 15:08:27 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 2.7 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maanova
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘maanova’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c makeratio.c -o makeratio.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c masvd.c -o masvd.o
In file included from masvd.c:17:
./masvd.h:14:6: error: conflicting types for 'dgesvd_'
void F77_NAME(dgesvd)(const char *jobu, const char *jobvt,
     ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:19:1: note: expanded from here
dgesvd_
^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: previous declaration is here
F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:445:1: note: expanded from here
dgesvd_
^
masvd.c:48:24: error: too few arguments to function call, expected 16, have 14
                         &tmp, &lwork, &info);
                                            ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: 'dgesvd_' declared here
F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:445:1: note: expanded from here
dgesvd_
^
masvd.c:58:24: error: too few arguments to function call, expected 16, have 14
                         work, &lwork, &info);
                                            ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:348:1: note: 'dgesvd_' declared here
F77_NAME(dgesvd)(const char* jobu, const char* jobvt, const int* m,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:445:1: note: expanded from here
dgesvd_
^
masvd.c:72:31: error: too few arguments to function call, expected 15, have 14
                         &tmp, &lwork, iwork, &info);
                                                   ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:2404:1: note: 'dgesdd_' declared here
F77_NAME(dgesdd)(const char* jobz,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:76:1: note: expanded from here
dgesdd_
^
masvd.c:81:31: error: too few arguments to function call, expected 15, have 14
                         work, &lwork, iwork, &info);
                                                   ^
/Library/Frameworks/R.framework/Resources/include/R_ext/Lapack.h:2404:1: note: 'dgesdd_' declared here
F77_NAME(dgesdd)(const char* jobz,
^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:81:24: note: expanded from macro 'F77_NAME'
#define F77_NAME(x)    F77_CALL(x)
                       ^
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:77:22: note: expanded from macro 'F77_CALL'
# define F77_CALL(x)    x ## _
                        ^
<scratch space>:76:1: note: expanded from here
dgesdd_
^
masvd.c:114:2: warning: '/*' within block comment [-Wcomment]
        /* work on a copy of x */
        ^
masvd.c:154:1: warning: '/*' within block comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: '/*' within block comment [-Wcomment]
    /* work on a copy of x */
    ^
masvd.c:165:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
masvd.c:189:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
5 warnings and 5 errors generated.
make: *** [masvd.o] Error 1
ERROR: compilation failed for package ‘maanova’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/maanova’