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This page was generated on 2023-10-20 09:38:10 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1674/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 2.4.3  (landing page)
Mauro Castro
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/RedeR
git_branch: RELEASE_3_17
git_last_commit: 9f6ef64
git_last_commit_date: 2023-08-30 20:15:15 -0400 (Wed, 30 Aug 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for RedeR on kjohnson2


To the developers/maintainers of the RedeR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RedeR
Version: 2.4.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_2.4.3.tar.gz
StartedAt: 2023-10-18 18:00:13 -0400 (Wed, 18 Oct 2023)
EndedAt: 2023-10-18 18:01:26 -0400 (Wed, 18 Oct 2023)
EllapsedTime: 73.6 seconds
RetCode: 0
Status:   OK  
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RedeR_2.4.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RedeR.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘2.4.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   1.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RedeR.Rcheck/00check.log’
for details.



Installation output

RedeR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RedeR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output


Example timings

RedeR.Rcheck/RedeR-Ex.timings

nameusersystemelapsed
RedPort-class0.0060.0000.007
RedPort0.0020.0000.002
RedeR.data0.4100.0230.646
addEdgeBetweenContainers0.0210.0020.036
addEdges0.0150.0010.024
addGraph0.0150.0010.024
addLegend0.0730.0020.109
addNodes0.0150.0020.023
addSeries000
addSubgraph000
addSubgraph.list000
att0.0430.0040.070
calld0.0590.0010.088
cea0.0150.0020.028
deSelectEdges0.0140.0020.025
deSelectGraph0.0140.0010.021
deSelectNodes0.0130.0010.023
deleteEdges0.0130.0010.022
deleteNodes0.0140.0010.024
deleteSelectedEdges0.0140.0010.025
deleteSelectedNodes0.0140.0010.020
duplicateGraph0.0000.0000.001
exitd0.0010.0000.004
getContainerComponets0.0140.0010.024
getEdgeIDs0.0140.0010.023
getEdges0.0130.0010.023
getGraph0.0130.0010.022
getNodeIDs0.0130.0010.023
getNodes0.0130.0010.022
getSourceEdgeIDs0.0140.0010.024
getTargetEdgeIDs0.0140.0010.024
gtoy.rm0.0010.0010.000
isRelaxActive0.0020.0000.002
mergeNodes0.0140.0010.024
mergeOutEdges0.0140.0020.024
nestNodes0.0130.0020.025
nesthc1.1730.0551.864
ping0.0010.0010.002
relax0.0170.0020.029
resetd0.0020.0010.004
selectAllEdges0.0170.0020.029
selectAllNodes0.0160.0010.025
selectEdges0.0150.0010.026
selectGraph0.0170.0010.029
selectNodes0.0170.0020.028
setArrowDirection0.0160.0020.028
subg0.0560.0050.088
updateContainerSize0.0160.0020.026
updateCoordXY0.0160.0020.031
updateGraph0.0170.0010.028
version0.0020.0010.005