Back to Mac ARM64 build report for BioC 3.17
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This page was generated on 2023-10-20 09:38:09 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1625/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RandomWalkRestartMH 1.20.0  (landing page)
Alberto Valdeolivas
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/RandomWalkRestartMH
git_branch: RELEASE_3_17
git_last_commit: 942d7db
git_last_commit_date: 2023-04-25 11:01:41 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for RandomWalkRestartMH on kjohnson2


To the developers/maintainers of the RandomWalkRestartMH package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: RandomWalkRestartMH
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RandomWalkRestartMH.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RandomWalkRestartMH_1.20.0.tar.gz
StartedAt: 2023-10-18 17:19:06 -0400 (Wed, 18 Oct 2023)
EndedAt: 2023-10-18 17:21:09 -0400 (Wed, 18 Oct 2023)
EllapsedTime: 122.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: RandomWalkRestartMH.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RandomWalkRestartMH.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RandomWalkRestartMH_1.20.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RandomWalkRestartMH.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RandomWalkRestartMH/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RandomWalkRestartMH’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 3-1.png
  docs/articles/RandomWalkRestartMH_files/figure-html/Figure 4-1.png
These are not fully portable file names.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
Found the following non-portable file path:
  RandomWalkRestartMH/docs/articles/RandomWalkRestartMH_files/accessible-code-block-0.0.1/empty-anchor.js

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RandomWalkRestartMH’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/RandomWalkRestartMH.Rcheck/00check.log’
for details.



Installation output

RandomWalkRestartMH.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RandomWalkRestartMH
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’
* installing *source* package ‘RandomWalkRestartMH’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RandomWalkRestartMH)

Tests output

RandomWalkRestartMH.Rcheck/tests/testthat.Rout


R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(RandomWalkRestartMH)
> 
> test_check("RandomWalkRestartMH")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
> 
> proc.time()
   user  system elapsed 
  4.090   0.236   6.336 

Example timings

RandomWalkRestartMH.Rcheck/RandomWalkRestartMH-Ex.timings

nameusersystemelapsed
Random.Walk.Restart.Multiplex0.2930.0090.496
Random.Walk.Restart.MultiplexHet0.4090.0060.582
compute.adjacency.matrix0.0240.0010.039
compute.transition.matrix0.0610.0070.107
create.multiplex0.0090.0020.016
create.multiplexHet0.0330.0050.060
create.multiplexHetNetwork.topResults0.1180.0130.195
create.multiplexNetwork.topResults0.0690.0080.121
isMultiplex0.0100.0020.016
isMultiplexHet0.0180.0030.031
isRWRMH_Results0.1050.0110.171
isRWRM_Results0.0780.0040.118
normalize.multiplex.adjacency0.0230.0020.035