| Back to Mac ARM64 build report for BioC 3.16 |
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This page was generated on 2023-04-19 11:01:55 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the hapFabia package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 888/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| hapFabia 1.40.0 (landing page) Andreas Mitterecker
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK |  | |||||||
| Package: hapFabia |
| Version: 1.40.0 |
| Command: rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh hapFabia_1.40.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R hapFabia.buildbin-libdir |
| StartedAt: 2023-04-18 16:22:33 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 16:23:05 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 32.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: hapFabia_1.40.0.tgz |
| PackageFileSize: 1.77 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf hapFabia.buildbin-libdir && mkdir hapFabia.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh hapFabia_1.40.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R hapFabia.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=hapFabia.buildbin-libdir hapFabia_1.40.0.tar.gz' >>>>>>> * installing *source* package ‘hapFabia’ ... ** using staged installation rmdir: inst/commandLine/i386: No such file or directory rmdir: inst/commandLine/x86_64: No such file or directory rmdir: inst/commandLine/ppc: No such file or directory rmdir: inst/commandLine/ppc64: No such file or directory rmdir: inst/commandLine: No such file or directory ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interfaceR.c -o interfaceR.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c split_sparse_matrixB.c -o split_sparse_matrixB.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c vcftoFABIAB.c -o vcftoFABIAB.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o hapFabia.so interfaceR.o split_sparse_matrixB.o vcftoFABIAB.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups clang -arch arm64 -c ./commandLine/split_sparse_matrix.c -o ./commandLine/split_sparse_matrix.o -falign-functions=64 -Wall -g -O2 clang -arch arm64 -c split_sparse_matrixB.c -o ./commandLine/split_sparse_matrixB.o -falign-functions=64 -Wall -g -O2 clang -arch arm64 ./commandLine/split_sparse_matrix.o ./commandLine/split_sparse_matrixB.o -o ./commandLine/split_sparse_matrix mv ./commandLine/split_sparse_matrix ../inst/commandLine/ clang -arch arm64 -c ./commandLine/vcftoFABIA.c -o ./commandLine/vcftoFABIA.o -falign-functions=64 -Wall -g -O2 clang -arch arm64 -c vcftoFABIAB.c -o ./commandLine/vcftoFABIAB.o -falign-functions=64 -Wall -g -O2 clang -arch arm64 ./commandLine/vcftoFABIA.o ./commandLine/vcftoFABIAB.o -o ./commandLine/vcftoFABIA mv ./commandLine/vcftoFABIA ../inst/commandLine/ installing to /Volumes/External/bbs-3.16-bioc-m1/meat/hapFabia.buildbin-libdir/00LOCK-hapFabia/00new/hapFabia/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hapFabia) >>>>>>> >>>>>>> FIXING LINKS FOR hapFabia.buildbin-libdir/hapFabia/libs/hapFabia.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "hapFabia.buildbin-libdir/hapFabia/libs/hapFabia.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "hapFabia.buildbin-libdir/hapFabia/libs/hapFabia.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "hapFabia.buildbin-libdir/hapFabia/libs/hapFabia.so"