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This page was generated on 2023-04-19 11:01:56 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
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BUILD results for NetPathMiner on kjohnson


To the developers/maintainers of the NetPathMiner package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1345/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
NetPathMiner 1.34.2  (landing page)
Ahmed Mohamed
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/NetPathMiner
git_branch: RELEASE_3_16
git_last_commit: 4612114
git_last_commit_date: 2023-02-14 18:44:07 -0400 (Tue, 14 Feb 2023)
kjohnsonmacOS 13.0 Ventura / arm64  ERROR    ERROR  skipped

Summary

Package: NetPathMiner
Version: 1.34.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner
StartedAt: 2023-04-17 18:47:35 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 18:47:50 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 15.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NetPathMiner
###
##############################################################################
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* checking for file ‘NetPathMiner/DESCRIPTION’ ... OK
* preparing ‘NetPathMiner’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘NetPathMiner’ ...
** using staged installation
'config' variable 'CPP' is defunct
checking for gcc... clang -arch arm64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch arm64 accepts -g... yes
checking for clang -arch arm64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch arm64 -E
checking for xmlParseFile in -lxml2... yes
checking for readSBML in -lsbml... no
untarring boost include tree...
SBML not found.
libXML2 found
checking for xml2-config... /usr/bin/xml2-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  -I . -I/opt/R/arm64/include -DHAVE_XML -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC  -falign-functions=64 -Wall -g -O2  -c PathRanker.cpp -o PathRanker.o
In file included from PathRanker.cpp:23:
In file included from ./boost/graph/graph_utility.hpp:30:
In file included from ./boost/graph/properties.hpp:19:
In file included from ./boost/property_map/property_map.hpp:844:
In file included from ./boost/property_map/vector_property_map.hpp:14:
In file included from ./boost/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/shared_ptr.hpp:32:
In file included from ./boost/smart_ptr/detail/shared_count.hpp:29:
./boost/smart_ptr/detail/sp_counted_base.hpp:60:11: fatal error: 'boost/smart_ptr/detail/sp_counted_base_sync.hpp' file not found
# include <boost/smart_ptr/detail/sp_counted_base_sync.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [PathRanker.o] Error 1
ERROR: compilation failed for package ‘NetPathMiner’
* removing ‘/private/tmp/RtmpuPMkB4/Rinst67006f41b706/NetPathMiner’
      -----------------------------------
ERROR: package installation failed