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This page was generated on 2022-06-30 14:50:07 -0400 (Thu, 30 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for breastCancerVDX on nebbiolo1


To the developers/maintainers of the breastCancerVDX package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 40/410HostnameOS / ArchINSTALLBUILDCHECK
breastCancerVDX 1.34.0  (landing page)
Markus Schroeder , Benjamin Haibe-Kains
Snapshot Date: 2022-06-30 07:30:02 -0400 (Thu, 30 Jun 2022)
git_url: https://git.bioconductor.org/packages/breastCancerVDX
git_branch: RELEASE_3_15
git_last_commit: c04bb66
git_last_commit_date: 2022-04-26 13:01:16 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: breastCancerVDX
Version: 1.34.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:breastCancerVDX.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings breastCancerVDX_1.34.0.tar.gz
StartedAt: 2022-06-30 11:11:25 -0400 (Thu, 30 Jun 2022)
EndedAt: 2022-06-30 11:12:31 -0400 (Thu, 30 Jun 2022)
EllapsedTime: 66.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: breastCancerVDX.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:breastCancerVDX.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings breastCancerVDX_1.34.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/breastCancerVDX.Rcheck’
* using R version 4.2.0 (2022-04-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘breastCancerVDX/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘breastCancerVDX’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘breastCancerVDX’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 39.6Mb
  sub-directories of 1Mb or more:
    data  39.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
          old_size new_size compress
  vdx.rda   39.5Mb   16.9Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/breastCancerVDX.Rcheck/00check.log’
for details.



Installation output

breastCancerVDX.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL breastCancerVDX
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘breastCancerVDX’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (breastCancerVDX)

Tests output


Example timings

breastCancerVDX.Rcheck/breastCancerVDX-Ex.timings

nameusersystemelapsed
vdx1.0010.0641.065