Back to Long Tests report for BioC 3.15

This page was generated on 2022-10-15 21:00:02 -0400 (Sat, 15 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4383
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CHECK results for biodbNcbi on nebbiolo1


To the developers/maintainers of the biodbNcbi package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 11/26HostnameOS / ArchCHECK
biodbNcbi 1.0.0  (landing page)
Pierrick Roger
Snapshot Date: 2022-10-15 06:55:01 -0400 (Sat, 15 Oct 2022)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_15
git_last_commit: 23ddd00
git_last_commit_date: 2022-09-23 13:16:57 -0400 (Fri, 23 Sep 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  WARNINGS  

Summary

Package: biodbNcbi
Version: 1.0.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.0.0.tar.gz
StartedAt: 2022-10-15 08:07:32 -0400 (Sat, 15 Oct 2022)
EndedAt: 2022-10-15 08:09:11 -0400 (Sat, 15 Oct 2022)
EllapsedTime: 99.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2022-10-15 08:08:07.605][biodb::testContext]
biodb.INFO [2022-10-15 08:08:07.606][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:07.607][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2022-10-15 08:08:07.608][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:07.608][biodb::testContext]
biodb.INFO [2022-10-15 08:08:07.619][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:07.621][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:07.626][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:07.627][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:08:07.627][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.630][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:08:07.642][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.644][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:08:07.645][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.648][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:08:07.648][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:08:07.649][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:08:07.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.652][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:08:07.652][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:08:07.653][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.656][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:08:07.657][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:08:07.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.659][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:08:07.660][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:08:07.661][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:08:07.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.663][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:08:07.664][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.667][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:08:07.667][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:08:07.668][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:08:07.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.671][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:07.671][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:08:07.672][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:08:07.673][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:08:07.673][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:08:07.674][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:08:07.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.677][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:08:07.677][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:08:07.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.680][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:08:07.681][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:08:07.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.683][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:08:07.684][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:08:07.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.687][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:08:07.687][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:08:07.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.690][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:08:07.691][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:08:07.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.693][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:07.694][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:08:07.699][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:08:07.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.701][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:08:07.702][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:08:07.703][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:08:07.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.708][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:08:07.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.745][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:08:07.746][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.746][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:07.747][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.748][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.749][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.749][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.750][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:07.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:07.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.752][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:08:07.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:07.754][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.754][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.755][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:07.755][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:07.755][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:07.755][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:07.755][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:07.756][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:07.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.758][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:07.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.760][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.761][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.761][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:07.762][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:07.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.763][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.764][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:08:07.765][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.766][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:07.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.768][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:07.768][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.769][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.770][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.771][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.771][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:07.772][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:07.773][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.773][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:08:07.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:07.775][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:07.776][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:07.777][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:07.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.778][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.779][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:07.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.780][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.781][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.782][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.782][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:07.783][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:07.784][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.785][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.785][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:08:07.787][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.787][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:08:07.788][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.789][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:07.789][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.790][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.791][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.792][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.792][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:07.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:07.794][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.794][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:08:07.795][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:07.796][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.796][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.797][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.798][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:07.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.800][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:07.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.802][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.803][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.803][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:07.804][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:07.805][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.805][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.806][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:08:07.807][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.808][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:07.809][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.809][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:07.810][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.811][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.812][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.812][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.813][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:07.814][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:07.814][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.815][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:08:07.816][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:07.816][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.817][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:07.818][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.819][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:07.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.821][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:07.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:07.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:07.823][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:07.823][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.824][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:07.825][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:07.825][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:07.826][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:07.829][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:07.829][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.888][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:08:07.891][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:08:07.892][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:08:07.893][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:08:07.894][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:08:07.895][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:08:07.896][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:07.897][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:07.898][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:08:07.899][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:08:07.900][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:08:07.901][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:08:07.902][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:07.903][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:07.904][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:07.905][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:07.906][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:08:07.907][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:08:07.908][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:08:07.909][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:08:07.910][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:08:07.911][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:08:07.912][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:08:07.913][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:08:07.914][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:08:07.915][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:08:07.916][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:08:07.917][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:08:07.918][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:08:07.919][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:08:07.920][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:08:07.921][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:08:07.921][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:08:07.922][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:08:07.923][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:08:07.924][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:08:07.925][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:08:07.926][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:08:07.927][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:08:07.928][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:08:07.929][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:08:07.930][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:08:07.931][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:08:07.932][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:08:07.933][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:08:07.934][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:07.935][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:08:07.936][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:08:07.937][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:08:07.938][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:08:07.939][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:08:07.940][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:08:07.941][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:08:07.942][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:08:07.943][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:08:07.944][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:08:07.945][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:08:07.946][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:08:07.947][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:08:07.948][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:08:07.948][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:08:07.949][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:08:07.950][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:08:07.951][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:08:07.952][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:08:07.953][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:08:07.954][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:08:07.959][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:08:07.960][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:08:07.961][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:08:07.961][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:08:07.962][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:08:07.963][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:08:07.964][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:08:07.965][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:08:07.966][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:08:07.967][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:08:07.968][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:08:07.969][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:08:07.970][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:08:07.971][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:08:07.972][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:08:07.973][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:08:07.977][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:08:07.978][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:07.980][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:07.981][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.982][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:07.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:08.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.062][bdb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:08.089][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:08.091][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.091][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2022-10-15 08:08:08.092][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.093][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:08.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.095][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.096][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.096][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2022-10-15 08:08:08.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:08.098][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.098][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2022-10-15 08:08:08.099][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:08.100][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2022-10-15 08:08:08.100][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2022-10-15 08:08:08.101][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:08.101][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:08.102][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:08.103][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.104][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:08.105][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.106][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.107][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:08.107][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2022-10-15 08:08:08.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:08.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:08.109][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.110][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:08.110][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:08:08.112][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.112][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2022-10-15 08:08:08.113][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.114][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:08.114][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.116][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.117][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.117][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:08.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:08.119][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.119][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2022-10-15 08:08:08.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2022-10-15 08:08:08.121][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2022-10-15 08:08:08.122][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:08.122][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:08.123][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:08.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.125][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:08.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.127][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.128][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:08.128][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:08.129][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:08.129][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:08.130][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.131][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:08.131][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:08:08.133][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:08.133][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2022-10-15 08:08:08.134][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.135][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:08.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.136][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.137][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.138][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.138][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:08.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:08.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.141][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2022-10-15 08:08:08.141][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.142][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:08.143][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:08.144][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:08.144][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:08.144][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:08.144][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:08.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.147][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:08.147][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.148][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.149][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.149][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:08.149][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:08.149][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:08.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:08.151][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:08.151][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.152][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:08.153][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:08:08.154][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.155][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2022-10-15 08:08:08.156][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.156][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:08.157][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.158][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.158][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.159][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.160][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:08.161][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:08.161][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.162][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2022-10-15 08:08:08.163][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:08.163][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2022-10-15 08:08:08.163][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:08.164][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:08.165][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:08.166][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:08.166][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.167][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.168][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:08.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:08.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:08.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:08.170][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:08.170][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:08.170][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:08.171][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:08.172][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:08.172][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:08.173][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:08.177][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2022-10-15 08:08:08.178][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:08.179][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:08.180][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2022-10-15 08:08:08.181][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:08.182][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2022-10-15 08:08:08.199][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:08.203][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2022-10-15 08:08:08.206][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:08.209][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2022-10-15 08:08:08.212][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:08.212][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:08.213][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2022-10-15 08:08:08.214][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:08.215][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:08.216][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2022-10-15 08:08:08.227][biodb::testThat]
biodb.INFO [2022-10-15 08:08:08.228][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:08:08.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:08.229][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:08.232][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2022-10-15 08:08:08.235][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:08.238][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:08.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.281][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.289][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:08.379][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2022-10-15 08:08:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.493][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.495][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.515][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.516][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.517][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.525][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.526][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.531][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.544][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2022-10-15 08:08:08.568][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:08.569][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:08.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.604][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.605][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.607][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:08.642][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2022-10-15 08:08:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.664][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:08.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:08.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.734][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.753][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.755][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.756][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.765][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.766][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:08.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.771][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:08.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:08.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.773][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:08.777][biodb::testThat]
biodb.INFO [2022-10-15 08:08:08.778][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:08:08.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:08.779][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:08.781][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2022-10-15 08:08:08.802][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:08.806][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2022-10-15 08:08:08.808][cch$loadFileContent] file.exist = [2]: "FALSE, TRUE".
biodb.TRACE[2022-10-15 08:08:08.811][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2022-10-15 08:08:08.813][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:08.814][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:08.815][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:08.816][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:08.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.834][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2022-10-15 08:08:08.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:08.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:08.857][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2022-10-15 08:08:09.915][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2022-10-15 08:08:10.912][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:10.918][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2022-10-15 08:08:10.936][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.TRACE[2022-10-15 08:08:10.944][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html"
biodb.DEBUG[2022-10-15 08:08:10.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:10.973][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:10.975][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:10.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:10.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:10.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:10.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:10.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:10.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:10.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.012][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:11.013][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:11.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:11.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:11.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:11.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:11.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:11.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:11.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:11.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.075][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:11.076][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:11.134][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2022-10-15 08:08:11.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:11.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:11.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:11.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:11.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:11.163][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.163][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:08:11.164][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.165][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.168][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.169][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:08:11.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.170][biodb::testThat]
biodb.WARN [2022-10-15 08:08:11.202][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2022-10-15 08:08:11.225][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2022-10-15 08:08:11.234][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.235][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:08:11.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.236][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.268][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:11.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:11.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:11.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:11.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:11.314][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.315][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:08:11.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.317][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.321][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.322][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:08:11.323][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.324][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.327][biodb::testThat]
biodb.INFO [2022-10-15 08:08:11.333][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:11.334][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:11.335][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:11.338][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2022-10-15 08:08:12.257][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2022-10-15 08:08:13.234][biodb::testThat]
biodb.INFO [2022-10-15 08:08:13.235][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:13.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:13.236][biodb::testThat]
biodb.INFO [2022-10-15 08:08:13.239][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:08:13.240][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2022-10-15 08:08:13.241][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2022-10-15 08:08:13.242][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:08:13.243][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.244][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.246][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-15 08:08:13.254][biodb::testContext]
biodb.INFO [2022-10-15 08:08:13.255][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:13.256][biodb::testContext] Test context - Gene long tests
biodb.INFO [2022-10-15 08:08:13.257][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:13.258][biodb::testContext]
biodb.INFO [2022-10-15 08:08:13.262][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:13.263][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:13.266][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:13.267][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:08:13.268][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.271][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:08:13.272][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.275][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:08:13.275][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.286][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:08:13.287][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:08:13.288][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:08:13.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.291][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:08:13.291][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:08:13.292][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.295][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:08:13.296][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:08:13.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.299][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:08:13.300][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:08:13.300][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:08:13.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.303][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:08:13.304][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.307][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:08:13.308][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:08:13.309][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:08:13.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.312][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:13.312][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:08:13.313][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:08:13.314][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:08:13.315][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:08:13.316][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:08:13.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.319][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:08:13.319][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:08:13.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.322][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:08:13.323][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:08:13.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.326][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:08:13.327][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:08:13.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.330][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:08:13.330][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:08:13.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.333][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:08:13.334][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:08:13.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.337][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:13.338][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:08:13.343][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:08:13.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.346][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:08:13.347][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:08:13.347][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:08:13.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.351][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:08:13.352][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.353][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:08:13.354][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.355][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.361][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.361][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.362][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.363][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.364][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:13.365][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.365][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.366][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:08:13.367][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.368][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:13.369][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:13.370][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:13.371][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.372][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.375][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.376][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.376][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.377][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.378][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.379][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.380][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:08:13.381][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.382][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:13.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.383][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.384][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.385][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.387][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.388][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:13.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.389][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.390][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:08:13.391][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.391][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.393][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:13.393][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:13.393][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:13.393][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:13.393][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:13.394][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:13.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.396][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.398][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.399][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.401][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.402][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.403][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:08:13.405][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.405][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:08:13.406][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.407][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.408][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.409][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.409][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.410][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.411][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:13.412][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.413][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.413][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:08:13.414][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.415][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.416][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.416][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.417][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:13.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.422][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.422][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.423][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.424][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.425][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.462][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.469][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:08:13.471][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.472][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:13.473][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.474][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.475][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.476][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.477][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.478][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:13.478][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.479][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.480][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:08:13.481][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.482][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.483][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.484][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:13.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.486][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.488][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.489][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.489][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.490][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.491][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.492][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.492][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.494][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:13.494][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.562][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:08:13.563][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:08:13.564][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:08:13.565][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:08:13.566][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:08:13.567][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:08:13.569][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:13.570][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:13.571][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:08:13.572][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:08:13.573][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:08:13.574][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:08:13.575][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:13.576][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:13.577][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:13.578][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:13.579][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:08:13.580][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:08:13.582][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:08:13.583][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:08:13.584][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:08:13.585][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:08:13.586][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:08:13.587][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:08:13.588][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:08:13.589][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:08:13.590][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:08:13.591][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:08:13.592][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:08:13.593][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:08:13.594][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:08:13.596][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:08:13.597][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:08:13.598][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:08:13.599][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:08:13.600][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:08:13.601][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:08:13.602][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:08:13.603][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:08:13.604][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:08:13.605][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:08:13.612][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:08:13.613][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:08:13.614][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:08:13.616][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:08:13.617][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:13.618][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:08:13.619][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:08:13.620][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:08:13.621][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:08:13.622][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:08:13.623][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:08:13.624][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:08:13.625][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:08:13.626][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:08:13.627][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:08:13.629][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:08:13.630][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:08:13.631][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:08:13.632][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:08:13.633][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:08:13.634][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:08:13.635][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:08:13.636][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:08:13.637][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:08:13.638][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:08:13.640][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:08:13.641][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:08:13.642][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:08:13.643][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:08:13.644][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:08:13.645][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:08:13.646][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:08:13.647][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:08:13.648][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:08:13.649][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:08:13.650][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:08:13.652][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:08:13.653][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:08:13.654][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:08:13.655][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:08:13.656][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:08:13.657][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:08:13.658][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:08:13.659][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:13.660][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:13.661][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.662][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:13.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:13.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:13.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:13.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:13.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:13.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:13.941][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:13.943][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:13.945][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.946][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2022-10-15 08:08:13.947][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.948][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.949][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.950][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.951][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.952][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.952][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2022-10-15 08:08:13.953][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.954][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.955][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2022-10-15 08:08:13.956][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.957][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2022-10-15 08:08:13.957][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2022-10-15 08:08:13.958][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.959][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.960][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:13.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.962][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.963][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.964][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.965][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.966][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.967][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:13.967][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2022-10-15 08:08:13.968][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.969][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.970][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.970][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:13.972][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:08:13.973][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.974][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2022-10-15 08:08:13.976][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.977][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:13.978][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.979][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.980][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.981][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.982][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:13.983][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:13.984][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:13.984][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2022-10-15 08:08:13.985][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2022-10-15 08:08:13.986][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2022-10-15 08:08:13.988][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:13.989][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:13.989][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:13.990][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.991][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.992][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:13.993][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:13.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:13.995][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:13.996][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:13.996][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:13.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:13.998][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:13.999][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.000][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:14.001][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:08:14.003][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:14.004][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2022-10-15 08:08:14.005][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.006][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:14.007][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.008][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.009][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.010][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.011][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:14.012][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:14.013][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.014][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2022-10-15 08:08:14.015][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.016][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:14.017][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:14.018][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:14.018][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:14.018][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:14.019][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:14.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:14.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:14.022][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:14.023][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:14.024][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:14.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.026][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:14.026][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:14.026][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:14.027][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:14.028][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:14.029][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.036][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:14.043][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:08:14.046][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.047][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2022-10-15 08:08:14.049][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:14.052][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.054][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.055][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.057][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:14.058][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:14.060][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.061][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2022-10-15 08:08:14.062][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:14.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2022-10-15 08:08:14.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:14.064][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:14.065][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:14.066][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:14.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:14.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:14.069][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:14.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:14.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:14.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:14.072][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:14.072][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:14.072][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:14.073][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:14.074][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:14.075][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:14.076][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:14.077][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2022-10-15 08:08:14.079][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:14.081][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:14.083][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2022-10-15 08:08:14.084][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:14.086][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2022-10-15 08:08:14.098][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:08:14.099][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2022-10-15 08:08:14.100][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:08:14.102][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2022-10-15 08:08:14.104][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.105][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.106][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2022-10-15 08:08:14.107][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.108][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.185][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2022-10-15 08:08:14.195][biodb::testThat]
biodb.INFO [2022-10-15 08:08:14.196][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:08:14.196][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:14.197][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:14.203][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2022-10-15 08:08:14.206][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:14.209][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:14.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:14.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:14.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:14.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:14.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:14.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:14.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:14.236][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.245][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.246][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.254][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.255][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.257][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.263][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.264][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.265][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.272][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.291][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.292][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.295][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:14.340][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2022-10-15 08:08:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:14.359][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:14.380][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:14.381][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2022-10-15 08:08:14.382][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:14.393][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2022-10-15 08:08:14.393][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.394][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2022-10-15 08:08:14.402][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.403][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.404][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2022-10-15 08:08:14.405][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.405][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2022-10-15 08:08:14.406][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.407][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-10-15 08:08:14.415][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2022-10-15 08:08:14.416][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2022-10-15 08:08:14.417][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:14.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2022-10-15 08:08:14.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:14.422][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2022-10-15 08:08:14.423][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:14.434][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:14.435][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:14.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:14.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:14.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:14.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:14.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:14.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:14.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.458][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:14.459][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:14.495][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2022-10-15 08:08:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.502][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:14.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.571][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.587][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.590][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.591][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.592][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.593][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.605][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.608][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.609][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.621][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.626][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.627][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.645][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.645][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.663][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.664][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:14.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.681][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.683][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.691][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:14.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.699][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:14.700][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.709][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.710][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.714][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.715][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.720][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.728][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.729][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.733][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.734][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.739][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:14.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.741][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.744][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.745][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.749][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.750][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.757][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2022-10-15 08:08:14.760][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:14.761][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:14.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:14.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:14.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:14.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:14.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:14.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:14.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:14.783][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.791][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.791][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:14.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.799][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.799][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.801][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.807][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.807][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:14.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.814][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.822][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.823][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:14.867][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2022-10-15 08:08:14.870][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:14.884][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:14.885][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2022-10-15 08:08:14.914][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:14.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2022-10-15 08:08:14.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:14.926][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:14.927][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:14.927][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:14.928][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:14.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:14.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:14.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:14.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:14.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:14.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:14.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:14.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:14.939][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2022-10-15 08:08:14.940][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:14.941][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:14.942][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2022-10-15 08:08:15.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2022-10-15 08:08:17.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:17.101][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2022-10-15 08:08:17.114][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2022-10-15 08:08:17.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2022-10-15 08:08:17.125][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:17.138][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:17.140][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:17.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:17.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:17.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:17.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:17.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:17.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:17.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.166][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.167][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:17.207][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2022-10-15 08:08:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.217][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:17.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.298][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.300][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.328][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.329][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.331][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.347][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.348][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.359][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.365][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.366][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.383][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.384][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.401][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.402][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.419][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.438][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.438][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.440][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.448][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.448][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.450][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.453][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.454][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.458][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.464][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.469][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.470][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.475][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.477][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.480][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.481][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.482][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.485][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.486][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.496][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2022-10-15 08:08:17.499][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:17.500][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:17.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:17.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:17.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:17.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:17.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:17.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:17.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:17.531][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.532][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.540][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.541][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.548][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.549][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.560][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.561][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.568][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.571][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.576][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.577][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.578][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:17.620][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2022-10-15 08:08:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.626][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:17.637][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:17.638][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2022-10-15 08:08:17.639][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:17.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2022-10-15 08:08:17.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:17.642][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2022-10-15 08:08:17.643][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:17.653][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:17.654][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:17.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:17.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:17.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:17.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:17.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:17.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:17.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.675][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.676][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:17.713][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2022-10-15 08:08:17.713][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.719][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.788][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.790][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.806][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.806][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.815][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.818][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.823][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.824][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.826][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.833][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.841][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.842][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.843][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.859][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.860][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.878][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.878][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.896][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.908][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.911][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.914][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.915][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.916][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:17.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.924][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.925][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:17.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.929][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.930][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.935][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:17.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.940][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:17.941][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:17.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.945][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.946][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:17.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.951][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:17.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:17.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.956][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.957][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.962][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.962][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:17.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:17.971][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2022-10-15 08:08:17.974][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:17.975][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:17.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:17.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:17.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:17.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:17.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:17.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:17.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:17.999][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:17.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.007][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:18.008][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.018][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:18.019][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:18.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.026][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:18.027][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:18.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.034][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:18.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:18.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.041][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:18.042][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:18.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:18.084][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2022-10-15 08:08:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.090][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:18.102][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:18.102][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2022-10-15 08:08:18.103][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:18.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2022-10-15 08:08:18.105][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:18.106][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:18.107][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:18.107][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:18.108][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:18.109][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:18.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:18.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:18.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:18.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:18.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:18.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:18.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:18.138][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2022-10-15 08:08:18.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:18.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:18.159][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2022-10-15 08:08:19.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2022-10-15 08:08:20.093][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:20.099][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2022-10-15 08:08:20.109][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2022-10-15 08:08:20.117][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2022-10-15 08:08:20.121][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:20.141][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:20.142][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:20.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:20.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:20.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:20.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:20.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:20.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:20.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.169][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:20.170][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:20.212][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2022-10-15 08:08:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:20.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:20.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:20.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.296][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.311][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.314][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.317][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:20.318][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.319][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.338][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:20.339][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.350][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.359][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.360][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.362][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.381][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.382][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.409][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.410][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.429][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:20.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.432][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.432][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:20.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.441][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:20.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.444][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.450][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:20.451][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.452][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:20.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.462][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.463][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.484][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.488][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.490][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.497][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.506][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.507][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.509][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.515][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.516][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.518][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.524][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:20.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.532][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.534][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.541][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.542][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.560][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2022-10-15 08:08:20.571][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:20.573][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:20.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:20.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:20.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:20.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:20.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:20.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:20.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:20.632][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.635][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.645][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.647][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.659][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:20.660][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.664][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:20.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.671][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:20.672][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.676][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:20.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:20.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.683][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:20.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.688][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.695][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.696][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:20.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:20.765][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2022-10-15 08:08:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:20.827][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:20.828][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2022-10-15 08:08:20.829][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:20.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2022-10-15 08:08:20.831][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:20.832][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:20.834][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:20.835][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:20.836][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:20.837][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:20.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:20.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:20.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:20.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:20.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:20.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:20.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:20.851][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2022-10-15 08:08:20.854][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:20.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:20.856][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2022-10-15 08:08:21.972][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2022-10-15 08:08:23.244][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:23.251][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2022-10-15 08:08:23.263][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2022-10-15 08:08:23.270][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2022-10-15 08:08:23.273][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:23.286][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:23.287][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:23.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.315][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:23.316][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:23.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:23.355][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2022-10-15 08:08:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.369][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.439][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.441][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.454][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.457][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:23.458][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.459][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:23.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.476][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:23.476][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.478][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:23.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.486][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.489][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.492][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.494][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.495][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.497][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.497][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.514][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.514][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.532][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.533][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.543][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:23.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.551][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:23.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.554][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.562][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.570][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:23.571][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.580][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.581][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.586][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.587][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.592][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.597][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.598][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.603][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.604][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.609][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:23.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.614][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.615][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.616][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.620][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.621][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.622][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.628][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2022-10-15 08:08:23.631][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:23.632][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:23.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:23.652][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.654][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.664][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.665][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.672][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:23.673][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.680][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:23.681][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.688][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:23.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.691][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.697][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.697][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.699][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:23.741][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2022-10-15 08:08:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:23.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:23.759][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:23.760][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2022-10-15 08:08:23.761][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:23.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2022-10-15 08:08:23.763][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:23.763][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:23.764][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:23.765][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:23.766][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:23.766][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:23.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:23.776][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2022-10-15 08:08:23.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:23.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:23.780][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2022-10-15 08:08:24.674][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2022-10-15 08:08:25.684][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:25.689][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2022-10-15 08:08:25.697][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2022-10-15 08:08:25.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2022-10-15 08:08:25.706][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:25.717][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:25.718][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:25.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:25.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:25.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:25.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:25.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:25.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:25.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.744][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:25.744][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:25.787][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2022-10-15 08:08:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:25.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.860][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.878][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:25.879][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.894][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.897][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:25.897][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.899][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.915][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.916][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.933][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.934][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:25.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.952][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:25.952][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:25.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.970][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:25.971][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:25.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.992][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:25.993][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.001][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.002][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.007][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:26.007][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:26.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.009][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.012][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.017][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:26.018][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:26.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.019][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.022][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:26.023][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.028][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:26.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:26.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.030][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.033][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.034][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.035][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.039][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.040][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.047][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2022-10-15 08:08:26.050][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:26.051][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:26.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:26.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:26.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:26.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:26.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:26.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:26.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:26.071][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.079][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:26.080][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:26.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.081][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.087][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:26.088][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:26.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.089][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.095][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:26.096][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:26.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.097][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.103][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:26.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:26.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.111][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.111][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:26.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:26.155][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2022-10-15 08:08:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:26.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:26.172][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2022-10-15 08:08:26.173][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2022-10-15 08:08:26.174][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:26.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2022-10-15 08:08:26.176][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:26.176][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:26.177][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:26.178][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:26.179][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:26.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:08:26.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:26.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:26.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:26.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:26.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:26.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:26.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:26.189][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2022-10-15 08:08:26.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:26.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:26.193][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2022-10-15 08:08:27.078][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2022-10-15 08:08:28.069][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:28.074][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2022-10-15 08:08:28.082][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2022-10-15 08:08:28.090][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2022-10-15 08:08:28.093][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:28.104][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:28.105][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2022-10-15 08:08:28.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:28.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:28.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:28.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:28.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:28.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:28.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.130][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:28.131][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:28.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:28.171][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2022-10-15 08:08:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.178][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:28.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:28.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.249][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.269][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.269][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.288][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.289][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.291][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.303][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.312][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.312][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.330][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.330][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.348][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.348][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.366][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.379][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.385][ef$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:28.386][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.388][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2022-10-15 08:08:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.395][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.396][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.400][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.401][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.406][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.412][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.412][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.417][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.418][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.419][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.423][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:28.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.428][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.429][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.434][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.435][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.440][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2022-10-15 08:08:28.443][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:28.443][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:28.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:28.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:28.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:28.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:28.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:28.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:28.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:28.453][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.461][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.461][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.468][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.469][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.470][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.471][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.472][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.473][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.479][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.482][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.483][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.484][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:28.518][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2022-10-15 08:08:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:28.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:28.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.591][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.593][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.610][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.610][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.629][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.629][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.631][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.639][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.645][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.646][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.651][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.651][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.653][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:28.657][biodb::testThat]
biodb.INFO [2022-10-15 08:08:28.658][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:08:28.659][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:28.659][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:28.661][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2022-10-15 08:08:28.662][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2022-10-15 08:08:28.663][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2022-10-15 08:08:28.664][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:28.709][loadFileContents] Loaded 8 files from cache: [8]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2022-10-15 08:08:28.711][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:28.725][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2022-10-15 08:08:28.726][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2022-10-15 08:08:28.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:28.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:28.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:28.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:28.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:28.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:28.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:28.749][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.757][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.758][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.766][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.767][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.774][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.775][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.782][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.790][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.791][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:28.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:28.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:28.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:28.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:28.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:28.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:28.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:28.857][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.864][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.865][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.867][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.872][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.873][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.876][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.880][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.881][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.888][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.896][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.897][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.900][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:28.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:28.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:28.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:28.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:28.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:28.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:28.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:28.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:28.960][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.968][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.969][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.970][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.976][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.977][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.984][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.985][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.992][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.000][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.001][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:29.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:29.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:29.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:29.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:29.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:29.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:29.058][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.073][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.074][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.081][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.081][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.083][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.088][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.089][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.091][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.096][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.103][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.104][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:29.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:29.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:29.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:29.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:29.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:29.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:29.181][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.183][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.190][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.191][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.192][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.198][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.199][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.207][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.207][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.215][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.217][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.223][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.224][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:29.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:29.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:29.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:29.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:29.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:29.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:29.288][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.299][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.300][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.310][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.311][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.320][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.321][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.330][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.340][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.341][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.343][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.345][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:29.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:29.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:29.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:29.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:29.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:29.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:29.447][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.456][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.457][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.457][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.458][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.464][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.465][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.472][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.473][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.480][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.489][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.489][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:29.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:29.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:29.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:29.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:29.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:29.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:29.535][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.537][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.542][ef$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.543][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-10-15 08:08:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-10-15 08:08:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.550][ef$get] Asked field names are: location.
biodb.TRACE[2022-10-15 08:08:29.551][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2022-10-15 08:08:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.553][ef$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.553][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2022-10-15 08:08:29.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2022-10-15 08:08:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.560][ef$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:08:29.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.563][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.564][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2022-10-15 08:08:29.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2022-10-15 08:08:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.659][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2022-10-15 08:08:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:29.748][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.748][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:08:29.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.750][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:29.752][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.754][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.754][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2022-10-15 08:08:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.773][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2022-10-15 08:08:29.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2022-10-15 08:08:29.798][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:29.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2022-10-15 08:08:29.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:29.800][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2022-10-15 08:08:29.801][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2022-10-15 08:08:29.810][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.811][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:08:29.812][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.812][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:29.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2022-10-15 08:08:29.861][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:29.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2022-10-15 08:08:29.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:29.864][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2022-10-15 08:08:29.873][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.873][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:08:29.874][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.875][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:29.884][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:29.897][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2022-10-15 08:08:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.921][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:29.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:29.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:29.939][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.940][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:08:29.940][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.941][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.946][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.947][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:08:29.947][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.948][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.951][biodb::testThat]
biodb.INFO [2022-10-15 08:08:29.952][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:29.952][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:29.953][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:29.955][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2022-10-15 08:08:32.095][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2022-10-15 08:08:34.765][biodb::testThat]
biodb.INFO [2022-10-15 08:08:34.766][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:34.766][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:34.767][biodb::testThat]
biodb.INFO [2022-10-15 08:08:34.769][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:08:34.770][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2022-10-15 08:08:34.771][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2022-10-15 08:08:34.772][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2022-10-15 08:08:34.777][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2022-10-15 08:08:34.778][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:08:34.779][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:34.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:34.780][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.781][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-15 08:08:34.784][biodb::testContext]
biodb.INFO [2022-10-15 08:08:34.785][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:34.786][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2022-10-15 08:08:34.786][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:08:34.787][biodb::testContext]
biodb.INFO [2022-10-15 08:08:34.791][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:34.792][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:34.794][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:34.795][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:08:34.796][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.799][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:08:34.799][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.802][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:08:34.803][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.805][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:08:34.806][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:08:34.807][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:08:34.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.809][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:08:34.810][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:08:34.811][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.813][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:08:34.814][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:08:34.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.817][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:08:34.817][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:08:34.818][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:08:34.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.821][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:08:34.822][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.824][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:08:34.825][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:08:34.826][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:08:34.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.828][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:34.829][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:08:34.830][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:08:34.830][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:08:34.831][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:08:34.832][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:08:34.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.834][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:08:34.835][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:08:34.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.838][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:08:34.838][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:08:34.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.841][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:08:34.842][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:08:34.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.844][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:08:34.845][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:08:34.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.848][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:08:34.848][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:08:34.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.851][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:08:34.851][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:08:34.856][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:08:34.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.859][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:08:34.859][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:08:34.860][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:08:34.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.863][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:08:34.864][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.865][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:08:34.866][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.867][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:34.868][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.875][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.876][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.877][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:34.878][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:34.879][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.879][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:08:34.880][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:34.881][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.881][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.882][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:34.882][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:34.882][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:34.882][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:34.882][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:34.883][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:34.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.885][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:34.885][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.886][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.887][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.887][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.888][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:34.889][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:34.890][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.890][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.891][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:08:34.892][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.893][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:34.894][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.895][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:34.895][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.896][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.897][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.897][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.898][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:34.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:34.899][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.900][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:08:34.901][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:34.901][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.902][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.903][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:34.903][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:34.903][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:34.903][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:08:34.903][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:08:34.904][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:34.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.906][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:34.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.907][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.908][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.909][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:34.909][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:34.910][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.911][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.912][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:08:34.913][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.914][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:08:34.914][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.915][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:34.916][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.916][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.917][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.918][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.919][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:08:34.919][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:34.920][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.921][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:08:34.921][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:34.922][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.923][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.924][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.924][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:34.925][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.926][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.926][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:34.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.928][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.929][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.930][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:34.930][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:34.931][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.932][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.933][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:08:34.934][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.935][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:08:34.935][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.936][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:34.937][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.937][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.938][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.939][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.940][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:08:34.940][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:34.941][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.942][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:08:34.942][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:34.943][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.944][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:34.945][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.945][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:08:34.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.947][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:34.948][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:34.949][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:34.949][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:34.950][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.951][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:34.951][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:34.952][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:34.953][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:34.954][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:34.954][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:34.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:34.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:34.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:34.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.010][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:08:35.011][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:08:35.012][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:08:35.013][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:08:35.014][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:08:35.015][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:08:35.016][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:35.017][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:35.018][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:08:35.019][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:08:35.020][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:08:35.021][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:08:35.022][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:08:35.023][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:08:35.024][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:35.025][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:35.026][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:08:35.027][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:08:35.028][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:08:35.029][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:08:35.030][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:08:35.031][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:08:35.032][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:08:35.032][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:08:35.033][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:08:35.034][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:08:35.035][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:08:35.036][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:08:35.037][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:08:35.038][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:08:35.039][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:08:35.040][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:08:35.041][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:08:35.042][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:08:35.043][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:08:35.044][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:08:35.045][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:08:35.046][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:08:35.047][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:08:35.048][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:08:35.049][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:08:35.050][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:08:35.051][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:08:35.052][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:08:35.053][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:08:35.054][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:35.055][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:08:35.056][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:08:35.057][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:08:35.057][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:08:35.058][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:08:35.059][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:08:35.060][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:08:35.061][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:08:35.062][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:08:35.063][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:08:35.064][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:08:35.065][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:08:35.066][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:08:35.067][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:08:35.068][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:08:35.069][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:08:35.070][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:08:35.071][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:08:35.072][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:08:35.073][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:08:35.074][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:08:35.075][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:08:35.076][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:08:35.077][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:08:35.078][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:08:35.079][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:08:35.080][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:08:35.081][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:08:35.082][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:08:35.083][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:08:35.084][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:08:35.085][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:08:35.086][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:08:35.091][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:08:35.092][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:08:35.093][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:08:35.094][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:08:35.095][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:08:35.096][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:08:35.097][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:08:35.098][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.099][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:08:35.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:35.175][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2022-10-15 08:08:35.176][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:08:35.178][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.178][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2022-10-15 08:08:35.179][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.180][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:35.181][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.181][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.182][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.183][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.183][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2022-10-15 08:08:35.184][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:35.185][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.185][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2022-10-15 08:08:35.186][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:35.187][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2022-10-15 08:08:35.187][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2022-10-15 08:08:35.188][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:35.188][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:35.189][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:35.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.191][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:35.192][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.192][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.193][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.194][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:08:35.194][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2022-10-15 08:08:35.194][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:35.195][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:35.196][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.196][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:35.197][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:08:35.199][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.199][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2022-10-15 08:08:35.200][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.201][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:35.202][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.202][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.203][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.204][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.205][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:35.205][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:35.206][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.207][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2022-10-15 08:08:35.207][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2022-10-15 08:08:35.208][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2022-10-15 08:08:35.209][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:35.210][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:35.210][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:08:35.211][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.212][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.212][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:35.213][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.214][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.214][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.215][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:35.215][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:35.216][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:35.216][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:35.217][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.218][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:35.219][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:08:35.220][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:35.221][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2022-10-15 08:08:35.222][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.222][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:35.223][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.224][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.225][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.225][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.226][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:35.227][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:35.227][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.228][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.229][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:08:35.230][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:35.231][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:08:35.231][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:08:35.231][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:08:35.232][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:35.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:35.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.236][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.236][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:35.236][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:35.236][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:35.237][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:35.238][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:35.238][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.239][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:35.240][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:08:35.241][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.242][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2022-10-15 08:08:35.243][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.243][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:08:35.244][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.245][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.246][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.247][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:08:35.247][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:08:35.248][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.249][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2022-10-15 08:08:35.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:08:35.250][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2022-10-15 08:08:35.250][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:08:35.251][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:08:35.252][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:08:35.253][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:08:35.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.255][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:08:35.255][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:08:35.256][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:08:35.257][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:08:35.257][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:35.257][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:08:35.257][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:08:35.258][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:08:35.259][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:08:35.259][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:08:35.260][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:35.261][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2022-10-15 08:08:35.262][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:08:35.263][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:08:35.264][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2022-10-15 08:08:35.265][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:08:35.267][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2022-10-15 08:08:35.273][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:08:35.274][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2022-10-15 08:08:35.274][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:08:35.276][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2022-10-15 08:08:35.276][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:08:35.277][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:08:35.278][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2022-10-15 08:08:35.279][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:08:35.280][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:08:35.281][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:08:35.294][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2022-10-15 08:08:35.301][biodb::testThat]
biodb.INFO [2022-10-15 08:08:35.302][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:08:35.303][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:35.303][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:35.310][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2022-10-15 08:08:35.313][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:35.315][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:35.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:35.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:35.327][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.335][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.342][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.342][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.349][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.357][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.357][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.364][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.365][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.372][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:35.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.380][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.380][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.403][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.410][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:35.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.418][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.418][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.425][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.426][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:35.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:35.511][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2022-10-15 08:08:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:35.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:35.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:35.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:35.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:35.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.589][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.608][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:35.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.626][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:35.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.645][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.663][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.682][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.683][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.701][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.719][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.719][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.721][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.741][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.742][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.759][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.760][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.777][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.778][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.795][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.796][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.814][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.862][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.867][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.868][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.873][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.874][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.878][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.879][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:35.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.884][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.889][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.890][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.892][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.895][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:35.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.897][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:35.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:35.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.903][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:35.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.908][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.911][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:35.912][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:35.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.917][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:35.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.925][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.933][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:35.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:35.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.940][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.941][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:35.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.947][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.948][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.967][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2022-10-15 08:08:35.971][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:35.972][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:35.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:35.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:35.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:35.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:35.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:35.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:35.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:35.983][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.992][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.001][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.001][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.009][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.010][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.017][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.018][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.034][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.043][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.068][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.076][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.084][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.085][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.093][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:36.183][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2022-10-15 08:08:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:36.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.269][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.306][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.325][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.344][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.344][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.362][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.363][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.364][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.381][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.440][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.440][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.458][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.459][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.476][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.477][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.479][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.497][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.514][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.514][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.532][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.542][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.547][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.548][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.553][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.554][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.558][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.559][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.575][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.592][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.592][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.597][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.612][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.618][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.619][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.623][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.624][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.625][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:36.629][biodb::testThat]
biodb.INFO [2022-10-15 08:08:36.630][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:08:36.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:36.631][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:36.633][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2022-10-15 08:08:36.634][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:36.635][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2022-10-15 08:08:36.637][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:36.638][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2022-10-15 08:08:36.639][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:36.650][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:36.651][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:36.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:36.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:36.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:36.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:36.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:36.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:36.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:36.661][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.670][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.677][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.678][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.685][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.685][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.692][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.693][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.700][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.701][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.708][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.716][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.718][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.725][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.733][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.738][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.739][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.740][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.746][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.754][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.754][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.761][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.762][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.764][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:36.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:36.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:36.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:36.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:36.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:36.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:36.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:36.856][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.864][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.865][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.871][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.872][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.887][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.889][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.896][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.902][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.909][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.911][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:36.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.927][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.932][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.933][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.940][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:36.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:36.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.955][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:36.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:36.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:36.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:37.054][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2022-10-15 08:08:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:08:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:37.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:08:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:08:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:37.077][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.078][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:08:37.079][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.079][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:37.081][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.083][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:37.084][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2022-10-15 08:08:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:37.102][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2022-10-15 08:08:37.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2022-10-15 08:08:37.128][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:37.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2022-10-15 08:08:37.130][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:37.131][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2022-10-15 08:08:37.132][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2022-10-15 08:08:37.141][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:37.142][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.143][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:37.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:37.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.146][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:37.147][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.148][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:08:37.149][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.149][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:37.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2022-10-15 08:08:37.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:37.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2022-10-15 08:08:37.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:37.200][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2022-10-15 08:08:37.210][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.210][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:08:37.211][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.212][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:08:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:08:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:08:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:08:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:08:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:37.269][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.270][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:08:37.271][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.271][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.274][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.275][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:08:37.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.276][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.280][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.280][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:37.281][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.282][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:37.284][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2022-10-15 08:08:37.479][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2022-10-15 08:08:37.667][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.668][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:08:37.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.669][biodb::testThat]
biodb.DEBUG[2022-10-15 08:08:37.804][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2022-10-15 08:08:37.905][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:37.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:37.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.913][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:37.915][biodb::testThat]
biodb.INFO [2022-10-15 08:08:37.915][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-10-15 08:08:37.916][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:37.917][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:37.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:38.005][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2022-10-15 08:08:38.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2022-10-15 08:08:38.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.010][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2022-10-15 08:08:38.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2022-10-15 08:08:38.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2022-10-15 08:08:38.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.085][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2022-10-15 08:08:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:38.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:38.153][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:38.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.156][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:38.186][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.188][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2022-10-15 08:08:38.190][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.194][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2022-10-15 08:08:38.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.424][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.425][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2022-10-15 08:08:38.426][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.427][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2022-10-15 08:08:38.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2022-10-15 08:08:38.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.474][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2022-10-15 08:08:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:38.528][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:38.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2022-10-15 08:08:38.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.533][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2022-10-15 08:08:38.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.571][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2022-10-15 08:08:38.573][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.574][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2022-10-15 08:08:38.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2022-10-15 08:08:38.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.617][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2022-10-15 08:08:38.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2022-10-15 08:08:38.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2022-10-15 08:08:38.661][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.662][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2022-10-15 08:08:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:38.685][biodb::testThat]
biodb.INFO [2022-10-15 08:08:38.686][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-10-15 08:08:38.686][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:38.687][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:38.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:38.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:38.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:38.783][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:38.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:38.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:38.786][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:38.787][private$loadEntries] Creating entries from ids [3]: "165363149, 165357795, 165356789".
biodb.DEBUG[2022-10-15 08:08:38.788][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:08:38.789][cch$loadFileContent] Trying to load 3 files from cache: [3]: "165363149, 165357795, 165356789".
biodb.TRACE[2022-10-15 08:08:38.790][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:38.792][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165363149.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165357795.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165356789.xml".
biodb.DEBUG[2022-10-15 08:08:38.793][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:38.803][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:08:38.804][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:38.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:38.815][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.823][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.824][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.831][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.832][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.840][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.840][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.848][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.848][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.850][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.856][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.864][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:38.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.872][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:38.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:38.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:38.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:38.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:38.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:38.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.896][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:38.897][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:38.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.904][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:38.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.911][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:38.912][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:38.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:38.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.919][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:38.920][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:38.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:39.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:39.011][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.013][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.019][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.020][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.021][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.027][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.027][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.034][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.035][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.042][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.043][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.050][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.051][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:39.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:39.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.065][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:39.066][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:39.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:39.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.088][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:39.089][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:39.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.096][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:39.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.103][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.104][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.111][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.112][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:39.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:39.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:39.230][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.238][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.239][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.246][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.247][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.254][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.254][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.261][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.262][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.269][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.270][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.277][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:39.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:39.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.284][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:39.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:39.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:39.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:39.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.307][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:39.308][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:39.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.315][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:39.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:39.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.323][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.323][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.330][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.331][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:39.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:39.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:39.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:39.439][self$createEntryFromContent] Accession numbers: 165363149, 165357795, 165356789.
biodb.DEBUG[2022-10-15 08:08:39.440][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:39.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.455][private$selectFields]
biodb.TRACE[2022-10-15 08:08:39.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:39.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:39.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.459][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.464][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.468][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:39.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.498][private$selectFields]
biodb.TRACE[2022-10-15 08:08:39.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:39.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:39.500][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.504][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.509][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.510][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.513][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.514][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:39.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357795].
biodb.DEBUG[2022-10-15 08:08:39.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.543][private$selectFields]
biodb.TRACE[2022-10-15 08:08:39.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:39.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:39.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.552][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.553][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:39.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.556][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.557][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:39.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356789].
biodb.DEBUG[2022-10-15 08:08:39.568][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:39.568][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:39.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:39.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:39.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:39.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:39.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:39.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:39.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:39.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:39.634][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:39.635][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:39.636][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:39.819][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:39.821][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:39.825][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:39.827][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:39.987][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:39.992][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2022-10-15 08:08:40.000][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2022-10-15 08:08:40.004][private$loadEntries] Creating entries from ids [3]: "165358109, 165355108, 165348936".
biodb.DEBUG[2022-10-15 08:08:40.004][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:08:40.005][cch$loadFileContent] Trying to load 3 files from cache: [3]: "165358109, 165355108, 165348936".
biodb.TRACE[2022-10-15 08:08:40.006][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:40.007][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:40.008][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:40.009][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:40.009][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:40.010][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:40.011][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2022-10-15 08:08:40.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358109,165355108,165348936/XML".
biodb.DEBUG[2022-10-15 08:08:40.014][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:40.014][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:40.015][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358109,165355108,165348936/XML".
biodb.TRACE[2022-10-15 08:08:40.161][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358109,165355108,165348936/XML).
biodb.TRACE[2022-10-15 08:08:40.437][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165358109.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165355108.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165348936.xml"
biodb.DEBUG[2022-10-15 08:08:40.440][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:40.450][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:08:40.451][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:40.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:40.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:40.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:40.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:40.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:40.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:40.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:40.461][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.469][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.469][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.477][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.484][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.485][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.486][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.492][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.499][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.499][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.506][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.514][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.523][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.531][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.545][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.546][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.547][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.552][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.560][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.561][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.568][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.569][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:40.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:40.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:40.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:40.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:40.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:40.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:40.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:40.655][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.663][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.671][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.673][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.678][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.679][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.680][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.686][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.687][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.688][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.693][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.694][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.701][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.708][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.718][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.725][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.731][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.732][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.733][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.738][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.740][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.746][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.747][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.759][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.759][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.792][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.800][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:40.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:40.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:40.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:40.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:40.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:40.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:40.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:40.844][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.846][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.852][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.854][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.859][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.860][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.867][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.867][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.874][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.875][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.876][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.882][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.882][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.889][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.891][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.897][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.899][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:40.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.914][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.919][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.920][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.926][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.941][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.942][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:41.048][self$createEntryFromContent] Accession numbers: 165358109, 165355108, 165348936.
biodb.DEBUG[2022-10-15 08:08:41.064][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:41.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.093][private$selectFields]
biodb.TRACE[2022-10-15 08:08:41.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:41.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:41.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.101][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.102][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.106][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358109].
biodb.DEBUG[2022-10-15 08:08:41.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.129][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.130][private$selectFields]
biodb.TRACE[2022-10-15 08:08:41.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:41.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:41.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.137][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.139][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.141][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.142][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:41.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.172][private$selectFields]
biodb.TRACE[2022-10-15 08:08:41.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:41.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:41.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.179][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.181][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.183][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.184][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:41.194][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:41.195][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:41.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:41.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:41.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:41.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:08:41.319][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:41.320][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:08:41.321][private$loadEntries] Creating entries from ids [3]: "165358605, 165355840, 165354839".
biodb.DEBUG[2022-10-15 08:08:41.322][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:08:41.323][cch$loadFileContent] Trying to load 3 files from cache: [3]: "165358605, 165355840, 165354839".
biodb.TRACE[2022-10-15 08:08:41.324][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:41.326][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165358605.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165355840.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165354839.xml".
biodb.DEBUG[2022-10-15 08:08:41.327][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:41.337][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:08:41.338][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:41.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.348][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.361][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.362][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.369][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.369][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.376][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.377][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.385][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.386][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.399][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.407][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.430][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.432][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.438][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.446][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.447][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.453][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.454][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:41.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:41.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.538][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.540][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.545][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.546][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.547][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.553][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.554][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.554][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.561][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.561][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.574][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.581][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.582][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.589][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.596][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.614][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.619][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.620][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.627][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.635][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.635][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:41.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.729][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.736][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.737][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.745][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.751][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.752][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.759][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.760][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.766][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.767][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.774][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.787][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:41.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.810][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.810][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.813][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:41.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.817][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.818][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.825][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.826][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.832][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.833][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:41.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:41.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.857][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:41.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:41.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:41.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:41.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:41.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:41.934][self$createEntryFromContent] Accession numbers: 165358605, 165355840, 165354839.
biodb.DEBUG[2022-10-15 08:08:41.935][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:41.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.950][private$selectFields]
biodb.TRACE[2022-10-15 08:08:41.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:41.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:41.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.959][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.962][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358605].
biodb.DEBUG[2022-10-15 08:08:41.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:41.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:41.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:41.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:41.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:41.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:41.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.991][private$selectFields]
biodb.TRACE[2022-10-15 08:08:41.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:41.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:41.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:41.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:41.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:41.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:41.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.000][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.000][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.004][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.013][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355840].
biodb.DEBUG[2022-10-15 08:08:42.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:42.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:42.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:42.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:42.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:42.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:42.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.028][private$selectFields]
biodb.TRACE[2022-10-15 08:08:42.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:42.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:42.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.034][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.035][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.037][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:42.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.040][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165354839].
biodb.DEBUG[2022-10-15 08:08:42.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:42.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:42.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:42.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:42.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:42.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:42.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:42.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:42.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:42.104][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:42.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:42.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:42.108][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:42.194][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:42.195][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:42.198][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:42.201][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:42.355][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:42.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2022-10-15 08:08:42.367][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2022-10-15 08:08:42.371][private$loadEntries] Creating entries from ids [2]: "165357861, 165356360".
biodb.DEBUG[2022-10-15 08:08:42.372][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:42.373][cch$loadFileContent] Trying to load 2 files from cache: [2]: "165357861, 165356360".
biodb.TRACE[2022-10-15 08:08:42.374][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:42.374][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:42.375][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:42.376][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:42.377][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:42.377][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:42.388][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2022-10-15 08:08:42.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357861,165356360/XML".
biodb.DEBUG[2022-10-15 08:08:42.391][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:42.392][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:42.393][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357861,165356360/XML".
biodb.TRACE[2022-10-15 08:08:42.526][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357861,165356360/XML).
biodb.TRACE[2022-10-15 08:08:42.799][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165357861.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165356360.xml"
biodb.DEBUG[2022-10-15 08:08:42.802][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:42.812][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:42.813][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:42.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:42.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:42.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:42.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:42.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:42.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:42.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:42.823][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.832][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.833][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.839][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.839][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.841][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.846][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.847][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.848][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.854][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.854][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.856][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.862][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.863][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.869][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:42.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:42.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.871][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.876][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:42.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:42.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:42.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:42.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:42.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.899][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:42.899][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:42.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.902][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:42.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:42.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.909][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:42.910][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:42.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.911][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:42.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.916][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:42.917][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:42.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:42.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:42.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.008][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.023][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.024][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.030][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.031][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.038][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.039][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.045][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.046][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.047][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.053][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.054][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.054][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.084][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.085][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.087][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.092][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.094][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.099][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.100][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.101][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.109][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:43.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:43.205][self$createEntryFromContent] Accession numbers: 165357861, 165356360.
biodb.DEBUG[2022-10-15 08:08:43.206][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:43.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.221][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.229][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.230][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.230][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.234][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:43.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.257][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.258][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.267][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.271][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:43.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356360].
biodb.DEBUG[2022-10-15 08:08:43.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.316][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.320][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.330][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.334][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:43.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:43.344][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:43.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:43.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:43.356][biodb::testThat]
biodb.INFO [2022-10-15 08:08:43.357][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-10-15 08:08:43.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:43.358][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:43.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:43.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:43.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:43.452][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:43.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2022-10-15 08:08:43.454][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:43.455][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2022-10-15 08:08:43.456][private$loadEntries] Creating entries from ids [2]: "165347136, 129954630".
biodb.DEBUG[2022-10-15 08:08:43.457][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:43.458][cch$loadFileContent] Trying to load 2 files from cache: [2]: "165347136, 129954630".
biodb.TRACE[2022-10-15 08:08:43.459][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:43.462][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165347136.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/129954630.xml".
biodb.DEBUG[2022-10-15 08:08:43.464][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:43.479][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:43.480][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:43.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.490][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.492][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.498][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.498][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.505][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.506][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.507][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.507][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.515][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.521][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.521][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.523][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.528][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.529][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.530][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.535][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.537][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.543][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.560][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.565][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.566][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.573][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.580][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.581][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.582][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.587][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.588][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.633][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:43.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.695][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.703][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.704][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.705][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.711][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.712][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.720][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.728][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.729][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.744][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.752][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.770][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.776][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.778][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.784][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.786][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.792][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.792][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.794][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.799][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.800][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:43.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:43.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:43.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:43.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:43.906][self$createEntryFromContent] Accession numbers: 165347136, 129954630.
biodb.DEBUG[2022-10-15 08:08:43.907][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:43.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.923][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.932][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.935][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357795].
biodb.DEBUG[2022-10-15 08:08:43.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.960][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.967][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.968][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.972][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165347136].
biodb.DEBUG[2022-10-15 08:08:43.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:43.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:43.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:43.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:43.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:43.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:43.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:43.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.996][private$selectFields]
biodb.TRACE[2022-10-15 08:08:43.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:43.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:43.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:43.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:43.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.008][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [129954630].
biodb.DEBUG[2022-10-15 08:08:44.018][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:44.019][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:44.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:44.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:44.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:44.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:44.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:44.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:44.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:44.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:44.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:44.080][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:44.081][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:44.164][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:44.166][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:44.169][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:44.171][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:44.340][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:44.345][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2022-10-15 08:08:44.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2022-10-15 08:08:44.356][private$loadEntries] Creating entries from ids [1]: "165345618".
biodb.DEBUG[2022-10-15 08:08:44.357][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:44.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "165345618".
biodb.TRACE[2022-10-15 08:08:44.359][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:44.360][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:44.361][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:44.361][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:44.362][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:44.363][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:44.363][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-15 08:08:44.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165345618/XML".
biodb.DEBUG[2022-10-15 08:08:44.366][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:44.367][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:44.368][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165345618/XML".
biodb.TRACE[2022-10-15 08:08:44.506][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165345618/XML).
biodb.TRACE[2022-10-15 08:08:44.722][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165345618.xml"
biodb.DEBUG[2022-10-15 08:08:44.726][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:44.737][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:44.738][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:44.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:44.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:44.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:44.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:44.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:44.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:44.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:44.748][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.756][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.757][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.764][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.765][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.772][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.787][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.794][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:44.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.802][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:44.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:44.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:44.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:44.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.833][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:44.834][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.840][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:44.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:44.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.848][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:44.849][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:44.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.850][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.855][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:44.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.857][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:44.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:44.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:44.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:44.939][self$createEntryFromContent] Accession numbers: 165345618.
biodb.DEBUG[2022-10-15 08:08:44.940][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:44.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:44.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:44.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:44.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:44.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:44.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:44.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.955][private$selectFields]
biodb.TRACE[2022-10-15 08:08:44.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:44.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:44.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.967][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.967][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358109].
biodb.DEBUG[2022-10-15 08:08:44.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:44.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:44.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:44.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:44.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:44.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:44.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.991][private$selectFields]
biodb.TRACE[2022-10-15 08:08:44.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:44.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:44.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:44.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:44.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:44.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:44.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.000][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.003][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:45.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.033][private$selectFields]
biodb.TRACE[2022-10-15 08:08:45.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:45.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:45.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.045][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165345618].
biodb.DEBUG[2022-10-15 08:08:45.055][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:45.056][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:45.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:45.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:45.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:45.142][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2022-10-15 08:08:45.143][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:45.144][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2022-10-15 08:08:45.146][private$loadEntries] Creating entries from ids [2]: "165354006, 165353641".
biodb.DEBUG[2022-10-15 08:08:45.146][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:45.147][cch$loadFileContent] Trying to load 2 files from cache: [2]: "165354006, 165353641".
biodb.TRACE[2022-10-15 08:08:45.148][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2022-10-15 08:08:45.150][loadFileContents] Loaded 2 files from cache: [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165354006.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165353641.xml".
biodb.DEBUG[2022-10-15 08:08:45.151][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:45.161][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:45.162][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:45.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.172][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.179][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.180][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.187][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.188][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.189][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.194][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.195][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.197][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.203][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.204][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.222][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:45.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.230][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:45.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:45.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:45.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.252][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:45.253][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:45.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.260][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:45.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.267][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.268][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.275][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.276][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:45.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.299][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:45.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:45.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.360][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.362][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.367][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.375][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.382][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.383][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.404][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:45.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.412][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:45.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:45.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:45.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:45.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:45.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.432][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.446][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:45.447][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:45.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.448][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.453][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:45.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:45.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:45.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:45.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.470][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.470][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:45.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:45.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:45.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:45.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:45.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:45.563][self$createEntryFromContent] Accession numbers: 165354006, 165353641.
biodb.DEBUG[2022-10-15 08:08:45.564][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:45.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.579][private$selectFields]
biodb.TRACE[2022-10-15 08:08:45.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:45.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:45.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.588][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355840].
biodb.DEBUG[2022-10-15 08:08:45.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.615][private$selectFields]
biodb.TRACE[2022-10-15 08:08:45.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:45.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:45.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.624][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.628][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165354006].
biodb.DEBUG[2022-10-15 08:08:45.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:45.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.657][private$selectFields]
biodb.TRACE[2022-10-15 08:08:45.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:45.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:45.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.662][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.665][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.666][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:45.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.670][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:45.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:45.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:45.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165353641].
biodb.DEBUG[2022-10-15 08:08:45.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:45.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:45.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:45.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:45.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:45.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:45.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:45.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:45.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:45.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:45.735][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:45.736][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:45.737][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:45.824][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:45.825][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:45.828][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:45.830][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:45.947][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:45.952][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2022-10-15 08:08:45.960][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2022-10-15 08:08:45.963][private$loadEntries] Creating entries from ids [1]: "83412006".
biodb.DEBUG[2022-10-15 08:08:45.963][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:45.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "83412006".
biodb.TRACE[2022-10-15 08:08:45.965][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:45.966][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:45.967][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:45.968][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:45.968][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:45.969][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:45.970][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-15 08:08:45.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83412006/XML".
biodb.DEBUG[2022-10-15 08:08:45.972][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:45.973][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:45.974][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83412006/XML".
biodb.TRACE[2022-10-15 08:08:46.093][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/83412006/XML).
biodb.TRACE[2022-10-15 08:08:46.253][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/83412006.xml"
biodb.DEBUG[2022-10-15 08:08:46.256][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:46.267][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:46.276][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:46.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.288][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.296][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.296][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.303][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.304][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.311][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.312][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.319][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.319][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.328][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.334][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:46.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:46.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.337][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.341][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:46.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:46.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.343][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:46.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:46.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:46.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:46.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.364][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:46.364][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:46.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.371][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:46.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.379][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:46.380][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:46.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.387][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:46.387][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:46.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:46.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:46.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:46.470][self$createEntryFromContent] Accession numbers: 83412006.
biodb.DEBUG[2022-10-15 08:08:46.471][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:46.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.493][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.498][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.502][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.504][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.505][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:46.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.530][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.534][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.535][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.538][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.539][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.543][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165345618].
biodb.DEBUG[2022-10-15 08:08:46.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.567][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.574][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.579][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [83412006].
biodb.DEBUG[2022-10-15 08:08:46.589][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:46.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:46.602][biodb::testThat]
biodb.INFO [2022-10-15 08:08:46.602][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-10-15 08:08:46.603][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:46.604][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:46.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.609][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:46.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:46.696][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:46.699][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:46.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:46.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:46.701][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:46.703][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:46.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.718][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.725][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.726][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.727][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.730][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:46.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.754][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.756][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.763][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.767][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357795].
biodb.DEBUG[2022-10-15 08:08:46.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.791][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.798][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.800][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356789].
biodb.DEBUG[2022-10-15 08:08:46.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:46.814][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:46.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:46.866][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:46.868][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:46.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2022-10-15 08:08:46.870][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:46.871][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2022-10-15 08:08:46.872][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:46.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.892][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.900][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.902][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.905][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.905][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358109].
biodb.DEBUG[2022-10-15 08:08:46.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.929][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.938][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.942][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:46.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:46.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:46.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:46.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:46.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:46.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:46.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.966][private$selectFields]
biodb.TRACE[2022-10-15 08:08:46.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:46.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:46.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.975][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:46.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.978][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:46.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:46.988][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:46.989][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:47.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:47.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:47.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:47.083][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:47.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:08:47.085][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:47.090][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:08:47.092][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:47.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.108][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.117][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.120][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.121][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.130][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358605].
biodb.DEBUG[2022-10-15 08:08:47.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.145][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.150][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.152][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.154][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.157][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.157][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355840].
biodb.DEBUG[2022-10-15 08:08:47.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.181][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.186][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.189][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.190][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.193][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.194][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165354839].
biodb.DEBUG[2022-10-15 08:08:47.204][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:47.205][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:47.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:47.258][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:47.260][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:47.261][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2022-10-15 08:08:47.262][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:47.263][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2022-10-15 08:08:47.264][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:47.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.279][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.284][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.288][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.297][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:47.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.322][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.331][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.334][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.335][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356360].
biodb.DEBUG[2022-10-15 08:08:47.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.359][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.359][private$selectFields]
biodb.TRACE[2022-10-15 08:08:47.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:47.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:47.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.368][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:47.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:47.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:47.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.407][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:47.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:47.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.412][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:47.413][biodb::testThat]
biodb.INFO [2022-10-15 08:08:47.414][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-10-15 08:08:47.414][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:47.415][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:47.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:47.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:47.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:47.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:47.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:47.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:47.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:47.507][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:47.509][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:47.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:47.511][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:47.595][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:47.597][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:47.599][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:47.601][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:47.715][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:47.720][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2022-10-15 08:08:47.727][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2022-10-15 08:08:47.731][private$loadEntries] Creating entries from ids [2]: "165364047, 165359084".
biodb.DEBUG[2022-10-15 08:08:47.732][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:47.733][cch$loadFileContent] Trying to load 2 files from cache: [2]: "165364047, 165359084".
biodb.TRACE[2022-10-15 08:08:47.734][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:47.734][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:47.735][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:47.736][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:47.737][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:47.737][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:47.738][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2022-10-15 08:08:47.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165364047,165359084/XML".
biodb.DEBUG[2022-10-15 08:08:47.741][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:47.742][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:47.742][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165364047,165359084/XML".
biodb.TRACE[2022-10-15 08:08:47.881][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165364047,165359084/XML).
biodb.TRACE[2022-10-15 08:08:48.111][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165364047.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165359084.xml"
biodb.DEBUG[2022-10-15 08:08:48.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:48.124][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:48.125][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:48.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:48.135][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.137][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.151][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.152][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.159][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.160][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.166][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.169][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.175][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.181][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:48.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.183][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.189][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:48.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:48.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:48.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:48.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:48.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.211][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:48.212][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:48.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.221][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.228][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:48.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:48.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.236][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.237][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.244][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.244][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.245][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.246][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:48.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.277][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:48.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:48.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:48.330][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.338][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.339][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.340][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.346][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.353][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.354][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.376][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:48.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.383][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:48.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:48.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:48.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:48.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:48.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.406][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:48.407][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.408][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.413][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:48.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.434][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:48.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:48.529][self$createEntryFromContent] Accession numbers: 165364047, 165359084.
biodb.DEBUG[2022-10-15 08:08:48.530][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:48.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.545][private$selectFields]
biodb.TRACE[2022-10-15 08:08:48.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:48.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:48.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.554][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.557][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.558][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364047].
biodb.DEBUG[2022-10-15 08:08:48.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.582][private$selectFields]
biodb.TRACE[2022-10-15 08:08:48.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:48.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:48.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.590][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.595][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:48.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.620][private$selectFields]
biodb.TRACE[2022-10-15 08:08:48.620][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:48.621][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:48.622][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.625][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.629][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:48.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.632][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:48.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165359084].
biodb.DEBUG[2022-10-15 08:08:48.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:48.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:48.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:48.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:48.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:48.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:48.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:48.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:48.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:48.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:48.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:48.704][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:48.706][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:48.792][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:48.794][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:48.797][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:48.799][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:48.907][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:48.912][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2022-10-15 08:08:48.920][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2022-10-15 08:08:48.923][private$loadEntries] Creating entries from ids [3]: "165363909, 165361315, 165360339".
biodb.DEBUG[2022-10-15 08:08:48.924][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:08:48.925][cch$loadFileContent] Trying to load 3 files from cache: [3]: "165363909, 165361315, 165360339".
biodb.TRACE[2022-10-15 08:08:48.926][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:48.926][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:48.927][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:48.928][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:48.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:48.929][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:48.930][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2022-10-15 08:08:48.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165363909,165361315,165360339/XML".
biodb.DEBUG[2022-10-15 08:08:48.933][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:48.934][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:48.935][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165363909,165361315,165360339/XML".
biodb.TRACE[2022-10-15 08:08:49.069][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165363909,165361315,165360339/XML).
biodb.TRACE[2022-10-15 08:08:49.292][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165363909.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165361315.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165360339.xml"
biodb.DEBUG[2022-10-15 08:08:49.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:49.305][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:08:49.306][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:49.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:49.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:49.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:49.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:49.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:49.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:49.316][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.324][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.324][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.331][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.332][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.347][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.349][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.357][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.357][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.358][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.359][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.365][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.365][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.372][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.380][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.395][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.396][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.402][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:49.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:49.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.410][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.417][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.418][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.419][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.425][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.427][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.441][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:49.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:49.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:49.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:49.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:49.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:49.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:49.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:49.511][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.513][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.518][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.519][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.520][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.526][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.526][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.533][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.534][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.541][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.542][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.543][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.549][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.550][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.556][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.563][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.570][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.593][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:49.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.595][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.601][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.608][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.609][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.616][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.617][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.624][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:49.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:49.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:49.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:49.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:49.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:49.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:49.702][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.710][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.711][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.712][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.725][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.726][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.727][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.733][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.734][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.735][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.741][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.743][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.751][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:49.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.760][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.777][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.791][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:49.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:49.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.794][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.802][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.803][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.811][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.811][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.813][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:49.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:49.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:49.917][self$createEntryFromContent] Accession numbers: 165363909, 165361315, 165360339.
biodb.DEBUG[2022-10-15 08:08:49.918][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:49.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:49.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:49.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:49.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:49.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:49.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.933][private$selectFields]
biodb.TRACE[2022-10-15 08:08:49.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:49.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:49.935][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.937][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.938][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.942][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.946][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363909].
biodb.DEBUG[2022-10-15 08:08:49.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:49.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:49.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:49.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:49.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:49.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:49.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.969][private$selectFields]
biodb.TRACE[2022-10-15 08:08:49.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:49.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:49.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:49.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.987][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:49.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165361315].
biodb.DEBUG[2022-10-15 08:08:49.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:49.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.012][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.013][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.018][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.021][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.026][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165360339].
biodb.DEBUG[2022-10-15 08:08:50.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:50.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:50.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:50.106][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:50.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:50.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:50.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:50.111][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:50.112][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:50.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.127][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.129][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.136][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.137][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.138][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.139][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.140][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:50.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.163][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.172][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.175][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.176][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357795].
biodb.DEBUG[2022-10-15 08:08:50.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.207][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.215][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.218][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.219][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356789].
biodb.DEBUG[2022-10-15 08:08:50.229][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:50.230][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:50.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:50.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:50.285][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:50.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2022-10-15 08:08:50.287][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:50.288][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2022-10-15 08:08:50.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:50.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.304][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.309][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.312][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.313][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.317][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358109].
biodb.DEBUG[2022-10-15 08:08:50.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.341][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.350][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.353][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:50.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.377][private$selectFields]
biodb.TRACE[2022-10-15 08:08:50.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:50.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:50.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.392][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.393][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:50.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.396][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:50.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:50.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:50.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:50.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:50.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:50.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:50.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:50.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:50.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:50.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:50.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:50.479][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:50.480][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:50.481][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:50.568][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:50.570][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:50.572][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:50.574][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:50.687][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:50.692][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2022-10-15 08:08:50.699][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2022-10-15 08:08:50.702][private$loadEntries] Creating entries from ids [2]: "165365150, 165362721".
biodb.DEBUG[2022-10-15 08:08:50.703][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2022-10-15 08:08:50.704][cch$loadFileContent] Trying to load 2 files from cache: [2]: "165365150, 165362721".
biodb.TRACE[2022-10-15 08:08:50.705][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:50.706][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:50.707][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:50.707][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:50.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:50.709][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:50.709][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2022-10-15 08:08:50.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365150,165362721/XML".
biodb.DEBUG[2022-10-15 08:08:50.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:50.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:50.714][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365150,165362721/XML".
biodb.TRACE[2022-10-15 08:08:50.831][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365150,165362721/XML).
biodb.TRACE[2022-10-15 08:08:51.055][private$doSaveContentToFile] Saving to cache [2]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165365150.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165362721.xml"
biodb.DEBUG[2022-10-15 08:08:51.059][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:51.077][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2022-10-15 08:08:51.078][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:51.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:51.089][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.097][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.098][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.113][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.113][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.121][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.128][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.129][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.131][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.136][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:51.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:51.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.144][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:51.145][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:51.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:51.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:51.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:51.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.161][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.167][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:51.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.169][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:51.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.174][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:51.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:51.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:51.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.182][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.189][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.190][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.197][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:51.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:51.275][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.288][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.289][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.297][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.298][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.305][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.305][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.307][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.312][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.314][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.320][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.321][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.328][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:51.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:51.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.335][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:51.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:51.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.343][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:51.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.358][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:51.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:51.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.366][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:51.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:51.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.373][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.374][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.381][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:51.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:51.474][self$createEntryFromContent] Accession numbers: 165365150, 165362721.
biodb.DEBUG[2022-10-15 08:08:51.475][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:51.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.495][private$selectFields]
biodb.TRACE[2022-10-15 08:08:51.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:51.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:51.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.502][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.505][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.506][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.509][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365150].
biodb.DEBUG[2022-10-15 08:08:51.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.534][private$selectFields]
biodb.TRACE[2022-10-15 08:08:51.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:51.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:51.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.538][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.541][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.543][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.546][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.546][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:51.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:51.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.571][private$selectFields]
biodb.TRACE[2022-10-15 08:08:51.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:51.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:51.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.580][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:51.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.584][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:51.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:51.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165362721].
biodb.DEBUG[2022-10-15 08:08:51.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:51.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:51.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:51.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:51.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:51.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:51.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:51.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:51.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:51.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:51.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:51.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:51.655][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:51.741][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:51.742][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:51.745][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:51.747][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:51.868][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:51.873][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2022-10-15 08:08:51.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2022-10-15 08:08:51.885][private$loadEntries] Creating entries from ids [3]: "165365156, 165364868, 165358705".
biodb.DEBUG[2022-10-15 08:08:51.886][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:08:51.907][cch$loadFileContent] Trying to load 3 files from cache: [3]: "165365156, 165364868, 165358705".
biodb.TRACE[2022-10-15 08:08:51.909][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2022-10-15 08:08:51.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:51.911][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:51.912][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:51.912][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:51.913][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:51.914][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2022-10-15 08:08:51.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365156,165364868,165358705/XML".
biodb.DEBUG[2022-10-15 08:08:51.917][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:51.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:51.918][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365156,165364868,165358705/XML".
biodb.TRACE[2022-10-15 08:08:52.044][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165365156,165364868,165358705/XML).
biodb.TRACE[2022-10-15 08:08:52.310][private$doSaveContentToFile] Saving to cache [3]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165365156.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165364868.xml, /home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165358705.xml"
biodb.DEBUG[2022-10-15 08:08:52.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:52.324][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:08:52.325][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:52.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:52.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:52.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:52.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:52.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:52.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:52.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:52.335][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.344][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.344][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.351][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.352][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.359][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.360][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.367][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.375][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.375][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.382][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.390][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.412][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.420][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.422][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.428][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.429][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.436][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.437][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.438][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:52.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:52.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:52.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:52.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:52.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:52.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:52.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:52.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:52.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:52.532][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.539][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.540][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.547][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.548][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.549][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.555][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.556][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.557][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.563][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.564][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.571][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.571][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.578][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.586][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.602][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.609][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.610][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.617][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.619][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.625][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.626][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.633][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.633][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.635][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:52.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:52.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:52.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:52.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:52.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:52.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:52.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:52.726][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.728][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.734][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.735][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.742][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.743][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.750][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.757][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.758][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.759][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.765][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.767][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.772][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.780][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:52.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.790][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.797][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:52.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.803][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.804][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:52.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.811][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.813][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.819][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.819][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.821][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.826][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.828][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:52.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:52.934][self$createEntryFromContent] Accession numbers: 165365156, 165364868, 165358705.
biodb.DEBUG[2022-10-15 08:08:52.935][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:52.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:52.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:52.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:52.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:52.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:52.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:52.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.951][private$selectFields]
biodb.TRACE[2022-10-15 08:08:52.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:52.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:52.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365156].
biodb.DEBUG[2022-10-15 08:08:52.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:52.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:52.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:52.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:52.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:52.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:52.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.987][private$selectFields]
biodb.TRACE[2022-10-15 08:08:52.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:52.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:52.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.992][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.995][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:52.995][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:52.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.997][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:52.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:52.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.000][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364868].
biodb.DEBUG[2022-10-15 08:08:53.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.025][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.034][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.037][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358705].
biodb.DEBUG[2022-10-15 08:08:53.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:53.048][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:53.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:53.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:53.126][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:53.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2022-10-15 08:08:53.128][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:53.129][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2022-10-15 08:08:53.131][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:53.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.146][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.147][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.151][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.155][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.158][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.159][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364047].
biodb.DEBUG[2022-10-15 08:08:53.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.184][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.188][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.193][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.196][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:53.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.220][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.228][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.242][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165359084].
biodb.DEBUG[2022-10-15 08:08:53.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:53.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:53.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:53.296][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:53.298][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:53.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2022-10-15 08:08:53.300][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:53.306][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2022-10-15 08:08:53.308][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:53.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.324][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.328][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.331][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.331][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.336][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363909].
biodb.DEBUG[2022-10-15 08:08:53.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.361][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.373][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.374][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165361315].
biodb.DEBUG[2022-10-15 08:08:53.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.399][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.408][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.410][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.411][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165360339].
biodb.DEBUG[2022-10-15 08:08:53.422][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:53.422][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:53.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:53.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:53.496][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:53.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:53.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:53.499][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:53.500][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:53.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.522][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.524][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.530][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.531][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.535][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:53.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.561][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.573][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357795].
biodb.DEBUG[2022-10-15 08:08:53.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.598][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.606][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.608][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.611][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356789].
biodb.DEBUG[2022-10-15 08:08:53.621][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:53.622][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:53.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:53.675][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:53.678][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:53.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2022-10-15 08:08:53.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:53.681][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2022-10-15 08:08:53.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:53.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.697][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.705][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.707][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.710][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358109].
biodb.DEBUG[2022-10-15 08:08:53.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.742][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.750][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.751][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.753][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.754][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:53.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.780][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.789][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.792][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.793][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165348936].
biodb.DEBUG[2022-10-15 08:08:53.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:53.804][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:53.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:53.876][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:53.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:53.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2022-10-15 08:08:53.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:53.881][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2022-10-15 08:08:53.882][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:53.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.898][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.903][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.907][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.910][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365150].
biodb.DEBUG[2022-10-15 08:08:53.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.942][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.944][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.949][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.951][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.954][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:53.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:53.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:53.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:53.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:53.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:53.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:53.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.980][private$selectFields]
biodb.TRACE[2022-10-15 08:08:53.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:53.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:53.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:53.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.992][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.993][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:53.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165362721].
biodb.DEBUG[2022-10-15 08:08:54.003][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:54.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:54.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:54.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:54.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:54.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2022-10-15 08:08:54.066][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:54.068][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2022-10-15 08:08:54.069][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:54.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.085][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.092][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.094][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.095][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.099][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365156].
biodb.DEBUG[2022-10-15 08:08:54.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.125][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.130][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.139][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.141][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.145][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364868].
biodb.DEBUG[2022-10-15 08:08:54.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.171][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.181][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:54.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.185][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358705].
biodb.DEBUG[2022-10-15 08:08:54.196][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:54.197][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:54.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:54.297][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:54.299][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:54.300][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:54.301][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:54.386][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:54.388][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:54.391][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:54.394][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:54.504][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:54.509][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2022-10-15 08:08:54.517][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2022-10-15 08:08:54.520][private$loadEntries] Creating entries from ids [1]: "165358916".
biodb.DEBUG[2022-10-15 08:08:54.521][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:54.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "165358916".
biodb.TRACE[2022-10-15 08:08:54.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:54.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:54.525][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:54.525][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:54.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:54.533][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:54.534][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-15 08:08:54.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358916/XML".
biodb.DEBUG[2022-10-15 08:08:54.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:54.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:54.540][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358916/XML".
biodb.TRACE[2022-10-15 08:08:54.674][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165358916/XML).
biodb.TRACE[2022-10-15 08:08:54.847][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165358916.xml"
biodb.DEBUG[2022-10-15 08:08:54.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:54.861][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:54.862][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:54.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.877][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:54.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:54.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.888][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:54.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:54.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:54.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.897][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:54.898][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:54.899][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.900][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:54.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:54.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.908][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.915][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:54.916][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.917][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.924][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:54.925][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.932][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:54.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.935][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.941][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:54.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:54.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:54.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:54.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.968][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:54.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.970][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.976][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:54.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:54.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.985][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:54.985][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:54.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:54.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.993][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:54.994][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.995][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:55.093][self$createEntryFromContent] Accession numbers: 165358916.
biodb.DEBUG[2022-10-15 08:08:55.094][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:55.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.110][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.118][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.118][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.119][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.122][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.123][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364047].
biodb.DEBUG[2022-10-15 08:08:55.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.148][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.160][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.161][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:55.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.186][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.191][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.194][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.195][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:55.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.199][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358916].
biodb.DEBUG[2022-10-15 08:08:55.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:55.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:55.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:55.272][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:55.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:55.275][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:55.276][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:55.360][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:55.362][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:55.365][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:55.368][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:55.483][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:55.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2022-10-15 08:08:55.497][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2022-10-15 08:08:55.501][private$loadEntries] Creating entries from ids [1]: "165357450".
biodb.DEBUG[2022-10-15 08:08:55.501][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:55.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "165357450".
biodb.TRACE[2022-10-15 08:08:55.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:55.504][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:55.505][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:55.506][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:55.507][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:55.508][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:55.508][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-15 08:08:55.510][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357450/XML".
biodb.DEBUG[2022-10-15 08:08:55.511][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:55.512][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:55.513][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357450/XML".
biodb.TRACE[2022-10-15 08:08:55.640][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165357450/XML).
biodb.TRACE[2022-10-15 08:08:55.802][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165357450.xml"
biodb.DEBUG[2022-10-15 08:08:55.805][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:55.815][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:55.816][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:55.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.827][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.829][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.835][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.836][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.837][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.843][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.844][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.851][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.851][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.859][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.866][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.867][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.868][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.874][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:55.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:55.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.876][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.877][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:55.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.882][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:55.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.884][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:55.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:55.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:55.891][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.900][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:55.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:55.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:55.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:55.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.915][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:55.916][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.918][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:55.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:55.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:55.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.926][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:55.927][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:55.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.934][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:55.935][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:55.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:55.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:55.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:56.023][self$createEntryFromContent] Accession numbers: 165357450.
biodb.DEBUG[2022-10-15 08:08:56.024][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:56.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.040][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.046][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.049][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.053][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165361315].
biodb.DEBUG[2022-10-15 08:08:56.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.079][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.088][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:56.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.124][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.129][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.133][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.136][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.137][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357450].
biodb.DEBUG[2022-10-15 08:08:56.148][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:56.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:56.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:56.223][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:56.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:56.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:08:56.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:56.228][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:08:56.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:56.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.245][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.255][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.259][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358605].
biodb.DEBUG[2022-10-15 08:08:56.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.284][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.294][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355840].
biodb.DEBUG[2022-10-15 08:08:56.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.329][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.340][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.343][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.343][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165354839].
biodb.DEBUG[2022-10-15 08:08:56.354][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:56.355][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:56.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:56.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:56.413][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:56.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2022-10-15 08:08:56.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:56.416][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2022-10-15 08:08:56.417][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:56.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.432][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.442][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.445][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:56.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.469][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.477][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.478][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.481][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356360].
biodb.DEBUG[2022-10-15 08:08:56.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.505][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.505][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.508][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.509][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.510][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.512][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.513][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.514][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.514][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:56.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.517][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.518][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:56.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:56.533][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:56.534][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:56.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:56.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:56.607][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:56.608][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:56.609][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:56.693][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:56.695][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:56.698][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:56.701][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:56.811][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:56.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2022-10-15 08:08:56.824][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2022-10-15 08:08:56.827][private$loadEntries] Creating entries from ids [1]: "165359495".
biodb.DEBUG[2022-10-15 08:08:56.828][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:08:56.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "165359495".
biodb.TRACE[2022-10-15 08:08:56.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:08:56.831][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:08:56.831][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:08:56.832][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:08:56.833][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:08:56.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2022-10-15 08:08:56.834][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2022-10-15 08:08:56.836][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165359495/XML".
biodb.DEBUG[2022-10-15 08:08:56.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:56.838][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:56.839][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165359495/XML".
biodb.TRACE[2022-10-15 08:08:56.980][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/165359495/XML).
biodb.TRACE[2022-10-15 08:08:57.170][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/165359495.xml"
biodb.DEBUG[2022-10-15 08:08:57.173][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:08:57.183][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:08:57.184][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2022-10-15 08:08:57.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.194][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.210][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.211][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.218][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.218][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.220][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.225][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.226][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.233][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.240][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.248][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:57.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:57.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.250][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.251][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:08:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.256][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:57.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:57.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:57.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.265][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.270][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:57.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:57.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.278][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:57.279][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:57.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.285][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:57.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:57.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2022-10-15 08:08:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.293][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:57.294][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:57.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:57.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:57.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2022-10-15 08:08:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2022-10-15 08:08:57.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2022-10-15 08:08:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.333][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2022-10-15 08:08:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2022-10-15 08:08:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:57.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:57.384][self$createEntryFromContent] Accession numbers: 165359495.
biodb.DEBUG[2022-10-15 08:08:57.385][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:57.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.400][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.414][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.418][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365150].
biodb.DEBUG[2022-10-15 08:08:57.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.442][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.451][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.453][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.454][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165362721].
biodb.DEBUG[2022-10-15 08:08:57.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.478][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.486][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.487][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.489][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.490][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.491][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165359495].
biodb.DEBUG[2022-10-15 08:08:57.501][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:57.501][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:57.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:57.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:57.556][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:57.557][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:57.559][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2022-10-15 08:08:57.643][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2022-10-15 08:08:57.644][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2022-10-15 08:08:57.647][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2022-10-15 08:08:57.650][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2022-10-15 08:08:57.764][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:57.769][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2022-10-15 08:08:57.777][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2022-10-15 08:08:57.780][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:57.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.804][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.813][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.813][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365156].
biodb.DEBUG[2022-10-15 08:08:57.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.842][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.849][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.851][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.854][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.854][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364868].
biodb.DEBUG[2022-10-15 08:08:57.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.878][private$selectFields]
biodb.TRACE[2022-10-15 08:08:57.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:57.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:57.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.887][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.887][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.891][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:57.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358705].
biodb.DEBUG[2022-10-15 08:08:57.901][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:57.902][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:57.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:57.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:57.973][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:57.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2022-10-15 08:08:57.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:57.976][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2022-10-15 08:08:57.978][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:57.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:57.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:57.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:57.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:57.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:57.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:57.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:57.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:57.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:57.999][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.004][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.007][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.008][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.011][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364047].
biodb.DEBUG[2022-10-15 08:08:58.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.036][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.045][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.049][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165363149].
biodb.DEBUG[2022-10-15 08:08:58.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.074][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358916].
biodb.DEBUG[2022-10-15 08:08:58.097][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:58.098][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:58.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:58.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:58.153][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:58.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2022-10-15 08:08:58.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:58.156][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2022-10-15 08:08:58.157][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:58.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.172][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.173][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.181][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.184][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165361315].
biodb.DEBUG[2022-10-15 08:08:58.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.219][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.223][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.224][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.226][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.228][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.231][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:58.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.256][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.259][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.265][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.268][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.268][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357450].
biodb.DEBUG[2022-10-15 08:08:58.278][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:58.279][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:58.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:58.348][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:58.350][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:58.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:08:58.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:58.353][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:08:58.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:58.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.369][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.381][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358605].
biodb.DEBUG[2022-10-15 08:08:58.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.412][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.421][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.424][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355840].
biodb.DEBUG[2022-10-15 08:08:58.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.449][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.454][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.458][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.461][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.461][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165354839].
biodb.DEBUG[2022-10-15 08:08:58.471][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:58.472][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:58.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:58.525][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:58.527][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:58.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2022-10-15 08:08:58.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:58.530][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2022-10-15 08:08:58.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:58.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.546][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.554][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.559][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165357861].
biodb.DEBUG[2022-10-15 08:08:58.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.583][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.591][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.601][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165356360].
biodb.DEBUG[2022-10-15 08:08:58.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.626][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.635][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165355108].
biodb.DEBUG[2022-10-15 08:08:58.649][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:58.650][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:58.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:58.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:58.724][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:58.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2022-10-15 08:08:58.726][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:58.727][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2022-10-15 08:08:58.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:58.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.745][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.750][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.754][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.758][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365150].
biodb.DEBUG[2022-10-15 08:08:58.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.783][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.791][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.791][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.793][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.796][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.814][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165362721].
biodb.DEBUG[2022-10-15 08:08:58.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.830][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.838][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.839][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.843][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.853][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165359495].
biodb.DEBUG[2022-10-15 08:08:58.853][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:58.854][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:58.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:58.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:58.911][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:58.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2022-10-15 08:08:58.913][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:58.914][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2022-10-15 08:08:58.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:58.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.931][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.939][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.940][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.944][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165365156].
biodb.DEBUG[2022-10-15 08:08:58.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.968][private$selectFields]
biodb.TRACE[2022-10-15 08:08:58.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:58.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:58.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:58.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.981][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:58.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:58.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:58.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:58.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165364868].
biodb.DEBUG[2022-10-15 08:08:58.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:58.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:58.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:58.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:58.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:58.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:59.006][private$selectFields]
biodb.TRACE[2022-10-15 08:08:59.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:59.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:59.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:59.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.021][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:59.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:08:59.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.026][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2022-10-15 08:08:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [165358705].
biodb.DEBUG[2022-10-15 08:08:59.036][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:59.037][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:59.057][biodb::testThat]
biodb.INFO [2022-10-15 08:08:59.058][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-10-15 08:08:59.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:59.059][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:59.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:59.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:59.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:59.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:59.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:59.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:59.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:59.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:08:59.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:59.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:08:59.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:59.155][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:08:59.156][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:59.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:59.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:59.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:59.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:59.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:59.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:59.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.263][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.264][private$selectFields]
biodb.TRACE[2022-10-15 08:08:59.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:59.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:59.266][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.267][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.273][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.273][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.276][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.278][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.279][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.281][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.282][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.284][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.286][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.289][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.292][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.293][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.295][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.296][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.300][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.300][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.303][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.306][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.307][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.309][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.310][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.311][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.312][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.314][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.315][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.315][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.317][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.318][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.319][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.320][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.321][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.323][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.324][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.328][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.329][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.331][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.336][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.337][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.338][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.339][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.340][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.342][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.344][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.345][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.345][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.347][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.350][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.351][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.352][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.353][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.354][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.354][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.355][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.356][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.356][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.357][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.358][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.361][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.361][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.363][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.364][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.365][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.372][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.372][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.374][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.383][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.383][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.391][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.396][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.397][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.398][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.399][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.400][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.402][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:08:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.555][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165363149, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]acetamidine, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, N'-cyano-N-methyl-N-[(3-oxidanylidene-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, ...].
biodb.DEBUG[2022-10-15 08:08:59.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:59.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:59.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:59.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:59.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:59.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:59.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.688][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.688][private$selectFields]
biodb.TRACE[2022-10-15 08:08:59.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:59.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:59.690][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.691][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.693][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.694][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.695][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.697][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.698][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.703][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.704][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.706][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.706][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.707][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.708][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.709][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.718][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.718][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.719][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.723][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.725][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.726][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.727][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.732][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.733][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.733][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.735][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.735][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.736][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.738][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.740][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.741][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.742][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.743][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.745][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.747][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.748][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.750][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.751][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.753][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.753][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.755][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.760][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.761][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.764][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.766][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.766][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.769][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.772][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.772][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.773][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.775][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.777][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.778][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.779][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.780][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.781][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.785][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.785][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:08:59.786][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.789][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.790][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.791][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.792][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.793][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.794][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.795][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.797][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.798][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.800][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.800][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.801][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.802][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.803][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.803][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.805][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.806][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.807][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.808][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.811][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.812][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.812][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.814][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.820][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.822][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.825][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.826][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.828][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.828][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.829][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.830][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.831][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:08:59.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:08:59.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:08:59.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:08:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:08:59.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:08:59.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:08:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:08:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:08:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:08:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:08:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:08:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:08:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:59.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:08:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:08:59.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:08:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165357795, 5-fluoro-2-hex-1-ynyl-benzaldehyde, 5-fluoro-2-hex-1-ynylbenzaldehyde, 5-fluoro-2-hex-1-ynylbenzaldehyde, 5-fluoranyl-2-hex-1-ynyl-benzaldehyde, ...].
biodb.DEBUG[2022-10-15 08:08:59.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:59.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:59.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:59.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:59.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:59.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:59.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:59.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:08:59.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:08:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.050][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.100][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.101][private$selectFields]
biodb.TRACE[2022-10-15 08:09:00.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:00.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:00.103][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.104][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.107][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.108][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.109][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.110][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.112][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.112][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.113][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.115][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.115][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.116][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.117][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.119][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.120][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.121][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.126][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.129][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.130][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.131][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.139][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.141][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.143][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.144][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.145][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.146][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.147][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.148][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.149][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.150][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.151][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.152][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.153][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.154][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.154][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.157][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.157][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.159][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.160][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.162][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.163][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.165][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.166][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.167][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.168][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.173][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.177][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.179][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.181][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.182][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.185][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.187][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.190][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.191][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.192][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.193][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.194][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.195][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.196][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.197][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.197][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.198][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.201][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.202][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.204][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.205][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.207][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.208][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.210][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.210][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.212][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.213][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.215][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.215][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.217][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.218][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.219][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.220][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.223][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.224][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.225][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.226][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.228][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.229][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.232][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.234][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.234][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.237][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.238][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.239][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.241][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.241][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.242][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.243][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.244][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165356789, (3-purin-9-ylcyclobutyl)methanol, [3-(9-purinyl)cyclobutyl]methanol, (3-purin-9-ylcyclobutyl)methanol, (3-purin-9-ylcyclobutyl)methanol, ...].
biodb.DEBUG[2022-10-15 08:09:00.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:00.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:00.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:00.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:00.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:00.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:00.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:00.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:00.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:00.453][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:00.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:00.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2022-10-15 08:09:00.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:00.458][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2022-10-15 08:09:00.459][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:00.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:00.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:00.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:00.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:00.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:00.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:00.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.529][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.567][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.568][private$selectFields]
biodb.TRACE[2022-10-15 08:09:00.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:00.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:00.570][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.570][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.573][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.574][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.576][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.577][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.578][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.580][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.582][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.584][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.585][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.587][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.592][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.595][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.596][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.597][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.604][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.610][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.611][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.613][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.614][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.616][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.619][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.620][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.622][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.622][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.624][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.624][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.625][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.627][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.628][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.630][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.631][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.632][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.633][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.635][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.637][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.638][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.640][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.641][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.643][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.644][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.650][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.655][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.656][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.658][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.659][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.661][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.662][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.662][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.665][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.666][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.667][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.668][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.670][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.671][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.671][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.673][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.673][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.675][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.676][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.677][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.678][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.679][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.681][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.687][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.688][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.689][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.690][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.695][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.701][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.702][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.708][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.709][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.710][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.712][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.713][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:00.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165358109, 3,5-dinitro-N-propyl-pyridin-4-amine, 3,5-dinitro-N-propyl-4-pyridinamine, 3,5-dinitro-N-propylpyridin-4-amine, 3,5-dinitro-N-propyl-pyridin-4-amine, ...].
biodb.DEBUG[2022-10-15 08:09:00.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:00.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:00.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:00.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:00.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:00.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:00.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:00.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.927][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:00.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:00.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.964][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.964][private$selectFields]
biodb.TRACE[2022-10-15 08:09:00.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:00.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:00.967][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:00.967][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:00.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:00.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.970][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.971][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:00.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.973][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:00.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.975][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.976][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.976][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:00.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.978][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.979][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:00.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.981][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.982][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:00.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.984][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:00.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:00.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:00.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:00.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:00.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.992][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.992][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:00.993][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:00.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.995][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.996][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:00.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:00.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:00.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:00.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.001][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.006][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.007][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.009][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.010][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.012][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.018][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.019][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.020][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.021][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.022][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.023][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.024][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.026][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.028][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.030][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.037][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.037][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.039][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.041][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.045][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.047][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.050][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.050][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.051][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.053][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.053][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.054][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.056][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.057][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.057][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.060][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.061][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.063][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.064][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.066][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.069][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.069][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.071][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.072][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.074][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.082][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.083][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.091][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.096][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.100][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.101][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.102][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355108, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, acetic acid [3-fluoro-2-[[(2R)-2-oxiranyl]methoxy]phenyl] ester, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, [3-fluoranyl-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] ethanoate, ...].
biodb.DEBUG[2022-10-15 08:09:01.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:01.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:01.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:01.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:01.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:01.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:01.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.364][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.365][private$selectFields]
biodb.TRACE[2022-10-15 08:09:01.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:01.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:01.367][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.367][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.373][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.374][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.376][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.377][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.379][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.380][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.381][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.382][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.384][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.384][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.386][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.386][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.393][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.393][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.401][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.406][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.407][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.407][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.409][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.409][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.412][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.414][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.415][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.417][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.418][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.418][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.420][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.420][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.421][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.422][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.423][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.424][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.426][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.427][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.429][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.434][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.437][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.438][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.439][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.446][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.446][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.448][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.451][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.452][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.453][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.454][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.455][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.456][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.457][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.458][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.458][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.460][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.461][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.462][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.462][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.463][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.464][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.465][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.465][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.467][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.467][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.469][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.469][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.470][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.471][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.472][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.473][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.475][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.477][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.480][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.482][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.483][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.484][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.485][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.486][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.487][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.490][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.491][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.493][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.496][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.497][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.498][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.499][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.500][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.500][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.501][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.502][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.502][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:01.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.588][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165348936, 3-amino-5-(5-nitro-2-furyl)pent-4-enoic acid, 3-amino-5-(5-nitro-2-furanyl)-4-pentenoic acid, 3-amino-5-(5-nitrofuran-2-yl)pent-4-enoic acid, 3-azanyl-5-(5-nitrofuran-2-yl)pent-4-enoic acid, ...].
biodb.DEBUG[2022-10-15 08:09:01.655][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:01.656][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:01.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:01.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:01.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:01.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:01.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:01.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:01.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:01.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2022-10-15 08:09:01.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:01.723][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2022-10-15 08:09:01.725][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:01.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:01.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:01.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:01.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:01.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:01.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:01.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.837][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.837][private$selectFields]
biodb.TRACE[2022-10-15 08:09:01.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:01.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:01.839][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.840][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.843][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.844][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.846][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.847][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.848][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.849][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.849][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.851][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.852][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.854][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.856][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.857][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.865][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.865][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.866][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.868][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.868][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.870][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.873][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.874][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.876][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.879][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.880][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.880][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.883][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.883][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.885][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.885][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.886][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.888][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.891][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.892][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.895][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.896][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.899][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.900][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.901][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.902][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.903][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.903][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.905][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.905][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.907][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.914][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.914][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.916][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.921][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.922][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.924][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.927][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.927][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.928][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.929][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.930][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.931][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.932][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.938][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.939][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:01.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.942][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.943][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:01.944][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.946][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.947][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.948][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.948][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.949][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.950][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.950][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:01.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.953][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:01.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.955][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:01.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.959][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:01.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.961][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:01.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:01.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.963][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:01.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:01.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:01.968][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.969][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:01.970][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:01.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:01.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:01.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.977][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.978][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:01.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:01.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.983][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.984][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:01.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.986][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.987][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:01.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.989][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.067][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165363149, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]acetamidine, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, N'-cyano-N-methyl-N-[(3-oxo-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, N'-cyano-N-methyl-N-[(3-oxidanylidene-2-azabicyclo[2.2.0]hex-5-en-6-yl)methyl]ethanimidamide, ...].
biodb.DEBUG[2022-10-15 08:09:02.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:02.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:02.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:02.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:02.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:02.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:02.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.247][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.248][private$selectFields]
biodb.TRACE[2022-10-15 08:09:02.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:02.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:02.250][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.251][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.254][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.255][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.256][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.257][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.257][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.259][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.259][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.260][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.261][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.262][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.263][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.264][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.264][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.265][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.267][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.268][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.269][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.270][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.275][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.276][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.277][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.281][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.284][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.285][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.294][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.296][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.297][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.299][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.301][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.302][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.303][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.305][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.306][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.307][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.308][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.308][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.311][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.313][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.315][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.316][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.325][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.325][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.327][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.332][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.333][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.339][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.342][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.342][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.344][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.350][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.352][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.353][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.354][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.355][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.359][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.359][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.361][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.362][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.364][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.365][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.367][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.370][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.371][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.373][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.380][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.380][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.381][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.382][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.383][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.383][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.384][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.386][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.389][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.390][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.391][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.392][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.395][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.396][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.398][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.401][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165357795, 5-fluoro-2-hex-1-ynyl-benzaldehyde, 5-fluoro-2-hex-1-ynylbenzaldehyde, 5-fluoro-2-hex-1-ynylbenzaldehyde, 5-fluoranyl-2-hex-1-ynyl-benzaldehyde, ...].
biodb.DEBUG[2022-10-15 08:09:02.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:02.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:02.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:02.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:02.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:02.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:02.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.801][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.802][private$selectFields]
biodb.TRACE[2022-10-15 08:09:02.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:02.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:02.804][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.804][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.806][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.807][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.808][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.810][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.810][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.812][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.813][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.816][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.818][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.819][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.821][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.825][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.828][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.829][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.830][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.831][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.836][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.837][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.839][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.842][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.843][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.844][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.845][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.846][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.848][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.849][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.850][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.851][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.855][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.856][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.857][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.859][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.860][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.862][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.867][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.875][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.876][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.877][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.880][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.883][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.885][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.888][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.889][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.889][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.891][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.891][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.892][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.894][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.894][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.895][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:02.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.896][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.897][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.898][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:02.899][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.902][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.910][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.911][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.911][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.912][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.913][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.915][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.915][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.917][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.921][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:02.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:02.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.924][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.927][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:02.928][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:02.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.929][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:02.931][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.932][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:02.934][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:02.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.937][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.940][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.941][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:02.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.944][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:02.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.946][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:02.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165356789, (3-purin-9-ylcyclobutyl)methanol, [3-(9-purinyl)cyclobutyl]methanol, (3-purin-9-ylcyclobutyl)methanol, (3-purin-9-ylcyclobutyl)methanol, ...].
biodb.DEBUG[2022-10-15 08:09:03.086][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:03.086][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:03.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:03.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:03.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:03.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:03.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:03.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:03.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:03.144][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:03.146][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:03.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2022-10-15 08:09:03.148][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:03.149][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2022-10-15 08:09:03.150][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:03.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:03.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:03.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:03.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:03.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:03.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:03.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.255][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.256][private$selectFields]
biodb.TRACE[2022-10-15 08:09:03.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:03.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:03.258][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.258][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.261][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.262][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.264][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.265][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.267][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.267][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.270][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.272][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.273][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.275][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.283][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.284][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.285][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.286][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.289][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.290][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.292][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.297][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.298][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.303][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.304][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.306][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.308][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.309][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.311][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.312][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.314][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.315][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.320][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.321][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.322][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.322][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.323][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.324][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.324][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.325][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.326][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.327][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.328][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.334][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.334][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.336][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.338][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.341][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.343][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.347][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.352][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.353][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.354][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.355][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.355][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.356][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.359][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.360][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.361][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.362][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.362][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.364][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.364][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.365][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.367][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.369][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.370][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.372][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.380][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.381][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.387][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.388][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.389][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.393][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.394][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.395][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.396][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.397][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.397][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.398][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.399][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165358109, 3,5-dinitro-N-propyl-pyridin-4-amine, 3,5-dinitro-N-propyl-4-pyridinamine, 3,5-dinitro-N-propylpyridin-4-amine, 3,5-dinitro-N-propyl-pyridin-4-amine, ...].
biodb.DEBUG[2022-10-15 08:09:03.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:03.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:03.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:03.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:03.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:03.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:03.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.644][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.645][private$selectFields]
biodb.TRACE[2022-10-15 08:09:03.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:03.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:03.647][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.647][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.650][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.651][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.653][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.655][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.656][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.658][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.659][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.661][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.662][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.663][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.668][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.671][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.672][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.672][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.680][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.685][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.686][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.688][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.689][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.690][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.690][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.691][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.692][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.693][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.694][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.696][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.697][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.699][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.700][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.702][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.703][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.705][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.705][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.707][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.708][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.709][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.710][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.712][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.714][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.717][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.718][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.719][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.722][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.723][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.728][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.729][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.730][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.732][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.734][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.736][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.737][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.738][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.738][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.740][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.740][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.741][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:03.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.742][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.743][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.744][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:03.744][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.747][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.748][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.750][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.750][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.752][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.753][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.755][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.756][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.756][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.758][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.758][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.760][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.762][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.769][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.769][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.771][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.775][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.777][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.782][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.783][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.785][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.786][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.788][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.866][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355108, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, acetic acid [3-fluoro-2-[[(2R)-2-oxiranyl]methoxy]phenyl] ester, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, [3-fluoranyl-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] ethanoate, ...].
biodb.DEBUG[2022-10-15 08:09:03.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:03.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:03.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:03.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:03.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:03.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:03.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:03.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:03.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.032][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.033][private$selectFields]
biodb.TRACE[2022-10-15 08:09:04.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:04.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:04.035][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.035][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.038][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.039][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.041][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.042][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.043][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.044][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.044][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.046][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.047][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.049][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.050][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.052][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.060][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.063][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.065][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.069][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.074][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.075][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.077][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.077][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.079][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.080][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.081][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.082][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.085][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.085][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.087][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.088][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.090][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.091][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.093][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.094][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.096][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.097][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.098][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.100][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.100][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.106][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.107][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.109][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.111][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.114][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.115][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.116][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.117][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.119][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.121][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.122][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.123][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.124][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.125][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.125][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.126][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:04.127][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.127][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.128][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.129][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.129][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.131][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.132][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.136][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.138][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.139][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.141][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.142][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.143][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.144][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.144][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.146][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.147][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.149][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.151][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.157][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.157][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.158][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.160][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.165][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.166][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.171][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.172][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.173][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.174][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.174][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.176][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165348936, 3-amino-5-(5-nitro-2-furyl)pent-4-enoic acid, 3-amino-5-(5-nitro-2-furanyl)-4-pentenoic acid, 3-amino-5-(5-nitrofuran-2-yl)pent-4-enoic acid, 3-azanyl-5-(5-nitrofuran-2-yl)pent-4-enoic acid, ...].
biodb.DEBUG[2022-10-15 08:09:04.319][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:04.320][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:09:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:09:04.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:04.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:04.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:04.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:04.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:04.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:04.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:04.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:04.408][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:04.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:09:04.410][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:04.411][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:09:04.412][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:04.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:04.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:04.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:04.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:04.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:04.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:04.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.511][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.512][private$selectFields]
biodb.TRACE[2022-10-15 08:09:04.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:04.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:04.514][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.514][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.516][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.517][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.518][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.519][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.520][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.522][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.523][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.525][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.526][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.528][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.529][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.530][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.531][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.540][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.540][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.542][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.551][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.551][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.553][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.555][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.556][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.556][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.557][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.558][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.558][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.559][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.560][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.562][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.565][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.566][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.567][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.568][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.568][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.570][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.571][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.572][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.572][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.573][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.574][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.578][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.579][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.586][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.587][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.589][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.589][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.595][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.600][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.601][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.602][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.603][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.604][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.606][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.606][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.607][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.609][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.610][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.611][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.613][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.613][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.615][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.617][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.618][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.619][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.621][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.622][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.624][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.626][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.632][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.633][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.641][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.643][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.645][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.646][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.647][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.650][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.651][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.652][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:04.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165358605, 3-methyl-5-phenyl-hex-2-enoic acid, 3-methyl-5-phenyl-2-hexenoic acid, 3-methyl-5-phenylhex-2-enoic acid, 3-methyl-5-phenyl-hex-2-enoic acid, ...].
biodb.DEBUG[2022-10-15 08:09:04.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:04.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:04.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:04.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:04.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:04.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:04.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.857][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.892][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.893][private$selectFields]
biodb.TRACE[2022-10-15 08:09:04.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:04.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:04.895][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.896][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.897][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.902][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.904][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.905][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.907][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.908][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.909][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.910][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.911][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.912][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.913][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.915][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.918][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.920][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.921][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.922][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.923][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.925][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.926][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.928][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.929][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.931][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.934][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.935][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.937][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.938][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.939][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.940][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.943][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.945][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.946][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.948][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.949][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.951][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:04.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.954][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.955][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:04.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.959][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.960][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:04.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:04.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:04.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:04.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:04.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.968][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:04.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:04.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.971][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:04.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.973][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:04.975][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.977][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:04.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:04.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:04.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.981][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.982][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.983][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:04.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.984][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.985][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:04.986][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.988][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.988][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:04.989][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:04.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:04.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.992][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.992][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:04.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.994][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.995][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:04.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:04.997][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.998][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:04.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:04.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.000][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.000][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.004][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.005][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.007][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.012][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.013][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.013][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.014][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.015][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.018][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.021][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.021][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.026][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.027][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.029][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.030][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.032][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:05.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.116][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.119][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355840, 4-[(6-vinyl-2-pyridyl)methyl]morpholine, 4-[(6-ethenyl-2-pyridinyl)methyl]morpholine, 4-[(6-ethenylpyridin-2-yl)methyl]morpholine, 4-[(6-ethenylpyridin-2-yl)methyl]morpholine, ...].
biodb.DEBUG[2022-10-15 08:09:05.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:05.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:05.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:05.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:05.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:05.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:05.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:05.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.249][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.285][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.286][private$selectFields]
biodb.TRACE[2022-10-15 08:09:05.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:05.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:05.288][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.288][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.291][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.292][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.294][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.295][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.296][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.297][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.297][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.300][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.300][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.302][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.303][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.304][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.305][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.306][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.307][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.314][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.314][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.316][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.322][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.328][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.328][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.330][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.331][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.333][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.333][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.335][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.335][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.336][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.337][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.337][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.338][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.340][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.342][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.342][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.344][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.344][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.345][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.346][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.347][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.348][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.349][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.350][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.352][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.358][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.358][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.360][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.361][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.363][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.367][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.369][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.372][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.373][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.374][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.375][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.375][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.376][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.377][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.378][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.378][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.379][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.383][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.386][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.387][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.389][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.390][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.392][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.392][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.394][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.395][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.400][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.402][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.408][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.409][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.410][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.411][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.413][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.416][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.418][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.426][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.427][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:05.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165354839, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, (Z)-3-(2-ethylphenyl)-2-propenoic acid ethyl ester, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, ...].
biodb.DEBUG[2022-10-15 08:09:05.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:05.570][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:05.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:05.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:05.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:05.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:05.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:05.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:05.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:05.626][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:05.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:05.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2022-10-15 08:09:05.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:05.631][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2022-10-15 08:09:05.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:05.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:05.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:05.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:05.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:05.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:05.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:05.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.730][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.730][private$selectFields]
biodb.TRACE[2022-10-15 08:09:05.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:05.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:05.732][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:05.733][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.735][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.736][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.737][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.739][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.739][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.741][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.741][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.742][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.743][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.744][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.745][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.747][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.748][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.750][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.758][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.759][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.766][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.771][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.772][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.774][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.777][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.780][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.780][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.782][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.783][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.790][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.790][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.791][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.792][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.794][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.794][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.795][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.796][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.796][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.797][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.799][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.805][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:05.806][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:05.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.807][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.813][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.818][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.819][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.821][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.823][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2022-10-15 08:09:05.824][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2022-10-15 08:09:05.825][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.828][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.830][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.830][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.831][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.832][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.833][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.834][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.836][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.836][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.838][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.840][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.841][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.843][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.846][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.849][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.854][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.855][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.857][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.860][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.861][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.863][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.865][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.865][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:05.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:05.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:05.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:05.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:05.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:05.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165357861, trimethylsilyl 2,5-dihydroxybenzoate, 2,5-dihydroxybenzoic acid trimethylsilyl ester, trimethylsilyl 2,5-dihydroxybenzoate, trimethylsilyl 2,5-bis(oxidanyl)benzoate, ...].
biodb.DEBUG[2022-10-15 08:09:06.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:06.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:06.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:06.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:06.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:06.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:06.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.099][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.100][private$selectFields]
biodb.TRACE[2022-10-15 08:09:06.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:06.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:06.102][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.102][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.105][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.106][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.108][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.109][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.109][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.111][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.111][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.113][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.114][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.117][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.118][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.119][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.123][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.126][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.127][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.127][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.128][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.130][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.132][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.136][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.138][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.141][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.142][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.143][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.144][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.144][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.146][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.149][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.151][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.153][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.155][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.157][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.158][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.160][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.161][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.163][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.165][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.168][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.170][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.171][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.172][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.173][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.178][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.179][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.181][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.184][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.184][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.185][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.187][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.188][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.189][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.189][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.190][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.191][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.191][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.193][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.198][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.200][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.201][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.201][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.203][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.204][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.205][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.206][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.207][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.207][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.208][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.210][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.211][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.211][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.216][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.220][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.222][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.228][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.233][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.234][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.236][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.237][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.239][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165356360, methyl 3-(3-methylsulfanylphenoxy)propanoate, 3-[3-(methylthio)phenoxy]propanoic acid methyl ester, methyl 3-(3-methylsulfanylphenoxy)propanoate, methyl 3-(3-methylsulfanylphenoxy)propanoate, ...].
biodb.DEBUG[2022-10-15 08:09:06.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:06.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:06.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:06.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:06.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:06.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:06.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.478][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.479][private$selectFields]
biodb.TRACE[2022-10-15 08:09:06.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:06.480][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:06.481][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.481][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.484][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.485][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.486][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.486][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.487][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.488][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.489][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.490][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.491][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.492][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.493][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.493][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.495][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.495][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.496][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.498][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.498][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.501][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.503][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.506][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.507][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.508][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.509][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.510][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.511][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.512][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.514][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.515][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.516][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.517][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.520][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.520][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.522][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.523][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.524][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.524][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.525][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.526][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.527][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.528][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.529][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.529][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.531][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.531][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.532][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.533][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.534][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.535][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.535][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.537][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.537][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.540][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.540][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.542][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.544][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.546][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.547][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.550][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.551][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.552][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.552][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.553][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.555][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.555][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.558][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.559][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.561][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.563][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.564][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.565][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.567][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.568][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.570][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.570][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.571][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.575][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.577][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.580][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.581][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.582][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.583][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.584][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.585][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.586][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.587][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.588][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.590][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.593][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.595][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.596][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.597][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.597][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.598][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.608][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.613][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.614][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.616][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.617][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.619][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.700][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355108, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, acetic acid [3-fluoro-2-[[(2R)-2-oxiranyl]methoxy]phenyl] ester, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, [3-fluoranyl-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] ethanoate, ...].
biodb.DEBUG[2022-10-15 08:09:06.760][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:06.760][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:06.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:06.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:06.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:06.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:06.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:06.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:06.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:06.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:06.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:06.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2022-10-15 08:09:06.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:06.829][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2022-10-15 08:09:06.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:06.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:06.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:06.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:06.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:06.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:06.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:06.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:06.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.934][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.935][private$selectFields]
biodb.TRACE[2022-10-15 08:09:06.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:06.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:06.937][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:06.938][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.940][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.941][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.943][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.944][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.945][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.946][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.947][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.948][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.950][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.951][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.952][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.952][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:06.953][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.954][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.955][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:06.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:06.956][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.957][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:06.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:06.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.960][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:06.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.963][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:06.964][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:06.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.966][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:06.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:06.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.971][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:06.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:06.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:06.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.977][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.978][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:06.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:06.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.983][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.983][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:06.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.985][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:06.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:06.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.988][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.989][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:06.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.990][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.991][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.992][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:06.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.993][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.994][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.995][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:06.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.996][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:06.997][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.998][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:06.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:06.999][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.000][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.001][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.003][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.018][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.019][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.021][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.026][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.027][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.029][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.032][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.032][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.033][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.034][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.034][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.037][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.038][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.039][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.041][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.041][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.042][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.045][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.046][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.047][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.048][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.049][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.050][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.051][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.052][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.053][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.054][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.056][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.057][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.058][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.068][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.076][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.081][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.081][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.085][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.085][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.087][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165358605, 3-methyl-5-phenyl-hex-2-enoic acid, 3-methyl-5-phenyl-2-hexenoic acid, 3-methyl-5-phenylhex-2-enoic acid, 3-methyl-5-phenyl-hex-2-enoic acid, ...].
biodb.DEBUG[2022-10-15 08:09:07.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:07.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:07.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:07.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:07.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:07.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:07.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.335][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.336][private$selectFields]
biodb.TRACE[2022-10-15 08:09:07.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:07.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:07.338][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.338][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.341][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.341][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.342][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.343][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.343][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.344][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.345][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.345][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.346][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.347][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.348][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.348][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.349][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.350][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.350][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.352][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.352][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.353][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.355][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.357][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.361][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.364][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.364][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.365][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.366][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.368][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.371][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.372][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.377][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.377][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.378][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.380][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.383][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.384][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.386][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.388][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.389][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.390][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.391][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.392][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.392][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.393][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.394][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.395][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.395][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.397][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.397][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.400][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.401][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.402][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.404][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.406][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.409][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.410][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.410][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.411][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.412][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.413][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.415][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.417][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.418][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.421][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.423][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.424][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.425][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.426][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.427][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.432][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.433][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.434][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.435][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.437][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.437][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.438][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.441][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.441][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.443][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.446][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.447][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.448][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.449][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.453][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.453][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.454][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.456][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.459][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.460][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.461][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.462][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.463][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.466][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.468][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.469][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.470][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.472][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.474][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.475][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.476][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.476][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.477][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.478][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.478][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.480][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.480][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355840, 4-[(6-vinyl-2-pyridyl)methyl]morpholine, 4-[(6-ethenyl-2-pyridinyl)methyl]morpholine, 4-[(6-ethenylpyridin-2-yl)methyl]morpholine, 4-[(6-ethenylpyridin-2-yl)methyl]morpholine, ...].
biodb.DEBUG[2022-10-15 08:09:07.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:07.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:07.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:07.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:07.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:07.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:07.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.727][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.728][private$selectFields]
biodb.TRACE[2022-10-15 08:09:07.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:07.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:07.730][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.730][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.733][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.733][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.734][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.735][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.736][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.737][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.739][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.740][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.740][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.741][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.742][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.742][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.744][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.745][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.746][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.747][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.754][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.754][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.755][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.757][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.759][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.760][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.763][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.769][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.769][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.771][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.772][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.773][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.774][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.775][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.776][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.777][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.779][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.780][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.780][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.782][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.783][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.785][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.786][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.786][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.787][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.788][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.788][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.789][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.790][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.790][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.791][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.793][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.793][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.795][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.798][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.798][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.799][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.800][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.800][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.801][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.802][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.803][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.804][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.807][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.810][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.815][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.816][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.818][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.819][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.821][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.822][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:07.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.824][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.824][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:07.825][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.828][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.830][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.830][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.831][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.832][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.833][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.834][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.835][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.835][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.836][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.837][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.843][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.845][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.850][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.853][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.854][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.855][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.856][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.861][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.863][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.867][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.867][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.869][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:07.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.871][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:07.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:07.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:07.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165354839, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, (Z)-3-(2-ethylphenyl)-2-propenoic acid ethyl ester, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, ethyl (Z)-3-(2-ethylphenyl)prop-2-enoate, ...].
biodb.DEBUG[2022-10-15 08:09:08.015][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:08.016][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:08.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:08.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:08.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:08.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:08.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:08.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:08.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:08.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2022-10-15 08:09:08.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:08.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2022-10-15 08:09:08.081][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:08.082][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2022-10-15 08:09:08.083][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:08.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:08.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:08.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:08.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:08.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:08.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:08.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.187][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.188][private$selectFields]
biodb.TRACE[2022-10-15 08:09:08.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:08.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:08.190][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.191][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.192][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.193][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.193][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.194][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.195][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.196][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.197][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.198][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.199][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.200][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.201][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.202][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.203][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.204][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.204][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.205][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.206][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.207][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.208][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.209][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.212][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.214][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.215][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.216][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.217][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.219][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.220][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.223][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.223][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.225][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.228][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.229][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.229][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.230][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.231][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.232][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.232][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.233][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.234][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.234][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.235][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.236][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.237][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.239][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.240][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.241][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.242][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.243][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.243][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.245][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.245][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.248][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.249][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.255][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.256][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.257][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.258][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.267][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.267][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.275][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.280][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.281][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.283][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.284][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.286][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.286][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.288][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2022-10-15 08:09:08.289][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2022-10-15 08:09:08.290][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.290][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.292][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.292][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.293][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.295][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.296][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.298][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.298][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.300][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.300][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.301][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.303][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.304][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.306][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.319][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.323][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.324][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.325][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.326][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.327][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.328][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.329][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.330][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.467][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165357861, trimethylsilyl 2,5-dihydroxybenzoate, 2,5-dihydroxybenzoic acid trimethylsilyl ester, trimethylsilyl 2,5-dihydroxybenzoate, trimethylsilyl 2,5-bis(oxidanyl)benzoate, ...].
biodb.DEBUG[2022-10-15 08:09:08.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:08.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:08.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:08.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:08.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:08.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:08.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.569][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.570][private$selectFields]
biodb.TRACE[2022-10-15 08:09:08.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:08.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:08.572][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.572][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.575][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.575][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.576][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.577][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.577][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.578][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.579][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.579][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.581][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.581][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.584][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.584][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.585][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.586][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.586][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.587][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.588][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.589][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.591][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.594][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.597][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.597][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.598][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.600][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.602][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.606][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.608][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.611][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.612][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.612][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.614][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.615][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.617][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.617][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.619][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.622][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.623][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.624][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.624][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.625][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.626][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.628][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.629][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.630][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.632][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.633][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.634][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.634][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.637][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.641][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.645][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.646][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.647][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.648][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.650][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.653][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.658][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.659][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.659][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.665][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.666][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.667][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.668][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.669][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.670][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.671][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.671][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.672][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.675][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.675][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.677][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.678][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.679][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.679][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.680][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.681][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.682][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.683][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.685][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.685][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.686][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.687][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.688][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.690][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.693][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.696][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.697][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.699][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.704][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.705][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.706][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.709][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.709][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.710][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.712][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.713][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.715][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165356360, methyl 3-(3-methylsulfanylphenoxy)propanoate, 3-[3-(methylthio)phenoxy]propanoic acid methyl ester, methyl 3-(3-methylsulfanylphenoxy)propanoate, methyl 3-(3-methylsulfanylphenoxy)propanoate, ...].
biodb.DEBUG[2022-10-15 08:09:08.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:08.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:08.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:08.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:08.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:08.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:08.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:08.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.961][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.962][private$selectFields]
biodb.TRACE[2022-10-15 08:09:08.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:08.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:08.964][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:08.964][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:08.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:08.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.966][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.967][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.968][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:08.969][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.969][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.970][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.971][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:08.971][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.972][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.973][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.974][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:08.974][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.975][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.976][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:08.977][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.978][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.979][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:08.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.981][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:08.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:08.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:08.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:08.985][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.986][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:08.988][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.989][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.989][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:08.990][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:08.991][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:08.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:08.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:08.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:08.998][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:08.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:08.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.006][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.007][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.008][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.008][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.009][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:09.010][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:09.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.012][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.014][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.014][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.018][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.019][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.021][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.021][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.022][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.023][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.023][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.024][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.028][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.029][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:09.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:09.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.031][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:09.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:09.033][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.034][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.037][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.037][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:09.038][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:09.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.042][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.045][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.046][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:09.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:09.048][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.048][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.050][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.051][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.052][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.053][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.054][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.055][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.055][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.056][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.057][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:09.058][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:09.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.060][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.060][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:09.061][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2022-10-15 08:09:09.062][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.065][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.065][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.068][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.068][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.070][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.071][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.077][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.078][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.080][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.080][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.081][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.083][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:09.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.085][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:09.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:09.087][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.088][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.090][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.091][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.091][ef$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:09.092][ef$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:09.093][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.094][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.100][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:09.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:09.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.106][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.106][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.108][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.109][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.111][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2022-10-15 08:09:09.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2022-10-15 08:09:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2022-10-15 08:09:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2022-10-15 08:09:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:09.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-10-15 08:09:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:09.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:09.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-10-15 08:09:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-10-15 08:09:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-10-15 08:09:09.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2022-10-15 08:09:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2022-10-15 08:09:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2022-10-15 08:09:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2022-10-15 08:09:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [165355108, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, acetic acid [3-fluoro-2-[[(2R)-2-oxiranyl]methoxy]phenyl] ester, [3-fluoro-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] acetate, [3-fluoranyl-2-[[(2R)-oxiran-2-yl]methoxy]phenyl] ethanoate, ...].
biodb.DEBUG[2022-10-15 08:09:09.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:09.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:09:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:09.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.264][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:09.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:09.267][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:09:09.268][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2022-10-15 08:09:09.269][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2022-10-15 08:09:09.269][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:09:09.270][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.272][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.273][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-10-15 08:09:09.276][biodb::testContext]
biodb.INFO [2022-10-15 08:09:09.277][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:09:09.278][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2022-10-15 08:09:09.278][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:09:09.279][biodb::testContext]
biodb.INFO [2022-10-15 08:09:09.287][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:09:09.288][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:09:09.291][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:09:09.292][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:09:09.293][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.295][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:09:09.296][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.299][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:09:09.299][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.302][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:09:09.303][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:09:09.303][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:09:09.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.306][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:09:09.306][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:09:09.307][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.310][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:09:09.310][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:09:09.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.313][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:09:09.314][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:09:09.314][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:09:09.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.317][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:09:09.318][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.320][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:09:09.321][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:09:09.322][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:09:09.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.324][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:09:09.325][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:09:09.325][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:09:09.326][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:09:09.327][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:09:09.328][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:09:09.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.330][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:09:09.331][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:09:09.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.334][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:09:09.334][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:09:09.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.337][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:09:09.338][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:09:09.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.340][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:09:09.341][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:09:09.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.343][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:09:09.344][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:09:09.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.347][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:09:09.347][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:09:09.352][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:09:09.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.354][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:09:09.355][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:09:09.356][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:09:09.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.358][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:09:09.360][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.360][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:09:09.361][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.362][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.363][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.363][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.364][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.365][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.365][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:09:09.366][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.367][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.368][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:09:09.368][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.369][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:09:09.370][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:09:09.371][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:09:09.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.373][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.375][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.375][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.376][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.377][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.378][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.378][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.379][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.380][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:09:09.381][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.382][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:09:09.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.384][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.385][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.386][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.387][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.387][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:09:09.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.389][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.389][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:09:09.390][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.391][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:09:09.392][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:09:09.393][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:09:09.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.397][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.398][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.401][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.401][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:09:09.403][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.403][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:09:09.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.406][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.408][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:09:09.409][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.410][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.411][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:09:09.411][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.412][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.413][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.413][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.414][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:09:09.415][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.416][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.417][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.418][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.419][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.420][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.421][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.421][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.422][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:09:09.424][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.424][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:09:09.425][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.426][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.426][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.427][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.428][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.429][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.429][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:09:09.430][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.431][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.431][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:09:09.432][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.433][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.434][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.434][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.435][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:09:09.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.437][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.438][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.439][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.440][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.440][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.441][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.442][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.443][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.443][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:09:09.444][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.505][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:09:09.507][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:09:09.508][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:09:09.509][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:09:09.509][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:09:09.511][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:09:09.512][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:09:09.512][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:09:09.513][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:09:09.514][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:09:09.515][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:09:09.516][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:09:09.517][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:09:09.518][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:09:09.519][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:09:09.520][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:09:09.521][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:09:09.522][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:09:09.523][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:09:09.524][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:09:09.525][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:09:09.526][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:09:09.527][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:09:09.528][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:09:09.529][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:09:09.530][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:09:09.531][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:09:09.532][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:09:09.533][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:09:09.534][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:09:09.535][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:09:09.535][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:09:09.536][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:09:09.537][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:09:09.538][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:09:09.539][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:09:09.540][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:09:09.541][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:09:09.542][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:09:09.543][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:09:09.544][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:09:09.545][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:09:09.546][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:09:09.547][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:09:09.548][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:09:09.549][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:09:09.550][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:09:09.551][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:09:09.552][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:09:09.553][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:09:09.554][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:09:09.554][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:09:09.555][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:09:09.556][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:09:09.557][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:09:09.558][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:09:09.559][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:09:09.560][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:09:09.561][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:09:09.562][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:09:09.563][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:09:09.564][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:09:09.565][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:09:09.566][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:09:09.567][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:09:09.568][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:09:09.569][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:09:09.570][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:09:09.571][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:09:09.572][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:09:09.573][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:09:09.574][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:09:09.575][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:09:09.576][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:09:09.577][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:09:09.578][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:09:09.579][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:09:09.580][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:09:09.581][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:09:09.582][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:09:09.583][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:09:09.584][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:09:09.585][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:09:09.586][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:09:09.587][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:09:09.588][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:09:09.589][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.590][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:09:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:09.667][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2022-10-15 08:09:09.668][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2022-10-15 08:09:09.670][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.670][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2022-10-15 08:09:09.671][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.672][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.672][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.673][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.674][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.675][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.675][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2022-10-15 08:09:09.676][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.677][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.677][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2022-10-15 08:09:09.678][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.679][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2022-10-15 08:09:09.679][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2022-10-15 08:09:09.680][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.680][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.681][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:09:09.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.683][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.684][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.684][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.685][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.685][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2022-10-15 08:09:09.685][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2022-10-15 08:09:09.686][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.687][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.687][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.688][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.689][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2022-10-15 08:09:09.690][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.691][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2022-10-15 08:09:09.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.692][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.693][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.694][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.694][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.695][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.696][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:09:09.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.697][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.703][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2022-10-15 08:09:09.703][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2022-10-15 08:09:09.704][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2022-10-15 08:09:09.705][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.706][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:09:09.706][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-10-15 08:09:09.707][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.708][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.708][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.709][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.710][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.710][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.711][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:09:09.711][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:09:09.712][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.712][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.713][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.713][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.714][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2022-10-15 08:09:09.716][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.716][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2022-10-15 08:09:09.717][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.718][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.718][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.719][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.720][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.720][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.721][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:09:09.722][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.722][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.723][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.724][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2022-10-15 08:09:09.725][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.726][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:09:09.726][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:09:09.726][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:09:09.727][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:09:09.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.728][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.729][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.730][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.731][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:09:09.731][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:09:09.731][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:09:09.732][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.732][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.733][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.734][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:09:09.735][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:09:09.736][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.737][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2022-10-15 08:09:09.737][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.738][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:09:09.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.739][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.740][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.741][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-10-15 08:09:09.742][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:09:09.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.743][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2022-10-15 08:09:09.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:09:09.745][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2022-10-15 08:09:09.745][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2022-10-15 08:09:09.745][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:09:09.746][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:09:09.747][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2022-10-15 08:09:09.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.749][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:09:09.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:09:09.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:09:09.751][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:09:09.752][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2022-10-15 08:09:09.752][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2022-10-15 08:09:09.752][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2022-10-15 08:09:09.752][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:09:09.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:09:09.754][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:09:09.754][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:09:09.755][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2022-10-15 08:09:09.756][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:09:09.757][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:09:09.758][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2022-10-15 08:09:09.759][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:09:09.761][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2022-10-15 08:09:09.765][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:09:09.765][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2022-10-15 08:09:09.766][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2022-10-15 08:09:09.767][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2022-10-15 08:09:09.768][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:09:09.769][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:09:09.770][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2022-10-15 08:09:09.771][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:09:09.771][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2022-10-15 08:09:09.772][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2022-10-15 08:09:09.785][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2022-10-15 08:09:09.792][biodb::testThat]
biodb.INFO [2022-10-15 08:09:09.793][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:09:09.793][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:09.794][biodb::testThat]
biodb.TRACE[2022-10-15 08:09:09.796][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2022-10-15 08:09:09.799][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:09:09.801][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2022-10-15 08:09:09.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:09.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:09.811][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.812][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.813][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.821][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:09:09.856][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2022-10-15 08:09:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:09.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:09.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:09.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.932][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.934][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.952][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.960][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:09.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:09.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.962][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:09.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:09.967][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:09.971][biodb::testThat]
biodb.INFO [2022-10-15 08:09:09.972][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:09:09.972][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:09.973][biodb::testThat]
biodb.DEBUG[2022-10-15 08:09:09.974][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2022-10-15 08:09:09.976][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:09:09.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2022-10-15 08:09:09.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:09.980][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2022-10-15 08:09:09.980][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:09:09.991][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:09:09.992][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2022-10-15 08:09:09.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:09.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:09.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:09.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:09.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:09.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:09.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:10.001][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:10.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:10.011][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:10.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2022-10-15 08:09:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:09:10.047][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2022-10-15 08:09:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:09:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:09:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:09:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:09:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:09:10.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:09:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:10.060][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.060][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:09:10.061][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.062][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.064][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.065][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:09:10.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.066][biodb::testThat]
biodb.WARN [2022-10-15 08:09:10.079][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2022-10-15 08:09:10.088][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2022-10-15 08:09:10.095][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.096][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:09:10.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.097][biodb::testThat]
biodb.TRACE[2022-10-15 08:09:10.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:10.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:10.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:10.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.136][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2022-10-15 08:09:10.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2022-10-15 08:09:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:09:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:10.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:09:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:09:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:10.154][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.155][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:09:10.156][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.156][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.160][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.160][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:09:10.161][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.161][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.165][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.165][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:09:10.166][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.167][biodb::testThat]
biodb.DEBUG[2022-10-15 08:09:10.169][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2022-10-15 08:09:10.275][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2022-10-15 08:09:10.459][biodb::testThat]
biodb.INFO [2022-10-15 08:09:10.460][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:09:10.461][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:10.462][biodb::testThat]
biodb.DEBUG[2022-10-15 08:09:10.583][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2022-10-15 08:09:10.676][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:09:10.679][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2022-10-15 08:09:10.680][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2022-10-15 08:09:10.681][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:09:10.682][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:10.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:10.683][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:10.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:10.685][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:10.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1032 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1032 ]
> 
> proc.time()
   user  system elapsed 
 38.605   1.618  64.447

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)