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This page was generated on 2022-04-13 12:07:33 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for waddR on tokay2


To the developers/maintainers of the waddR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/waddR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2058/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waddR 1.8.0  (landing page)
Julian Flesch
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/waddR
git_branch: RELEASE_3_14
git_last_commit: 540ab09
git_last_commit_date: 2021-10-26 12:55:17 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: waddR
Version: 1.8.0
Command: rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.8.0.tar.gz
StartedAt: 2022-04-13 07:19:47 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:21:13 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 85.8 seconds
RetCode: 0
Status:   OK  
PackageFile: waddR_1.8.0.zip
PackageFileSize: 927.6 KiB

Command output

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###
### Running command:
###
###   rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.8.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'waddR' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)':
wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
      for(int i=0; i<x.size(); i++) {
                   ~^~~~~~~~~
wasserstein.cpp: In function 'std::vector<double> concat(std::vector<double>&, std::vector<double>&)':
wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable]
  vector<double>::iterator out_it_end = out.end();
                           ^~~~~~~~~~
wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)':
wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
    while (data_i < datavec.size()) {
           ~~~~~~~^~~~~~~~~~~~~~~~
wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)':
wasserstein.cpp:1088:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
                ~^~~~~~~~~
wasserstein.cpp:1089:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
                ~^~~~~~~~~
wasserstein.cpp: In instantiation of 'double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]':
wasserstein.cpp:716:49:   required from here
wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  for (int i=0; i<x.size(); i++){
wasserstein.cpp: In instantiation of 'std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:778:44:   required from here
wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]':
wasserstein.cpp:884:17:   required from here
wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
  int upper = ((last_index > 0) && (last_index <= x.size())
                                   ~~~~~~~~~~~~^~~~~~~~~~~~
wasserstein.cpp: In instantiation of 'std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:912:62:   required from here
wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]':
wasserstein.cpp:933:15:   required from here
wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
   for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:1046:15:   required from here
wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]':
wasserstein.cpp:1162:27:   required from here
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
  T max_x = x_sorted[n-1];
    ^~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'waddR'
    finding HTML links ... done
    brownianBridgeEmpcdf.url                html  
    dot-brownianBridgeEmpcdf                html  
    dot-combinePVal                         html  
    dot-fishersCombinedPval                 html  
    dot-gpdFittedPValue                     html  
    dot-quantileCorrelation                 html  
    dot-relativeError                       html  
    dot-testWass                            html  
    dot-wassPermProcedure                   html  
    dot-wassersteinTestAsy                  html  
    dot-wassersteinTestSp                   html  
    permutations                            html  
    squared_wass_approx                     html  
    squared_wass_decomp                     html  
    testZeroes-method                       html  
    waddR-package                           html  
    wasserstein.sc-method                   html  
    wasserstein.test                        html  
    wasserstein_metric                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'waddR' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)':
wasserstein.cpp:348:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
      for(int i=0; i<x.size(); i++) {
                   ~^~~~~~~~~
wasserstein.cpp: In function 'std::vector<double> concat(std::vector<double>&, std::vector<double>&)':
wasserstein.cpp:386:27: warning: variable 'out_it_end' set but not used [-Wunused-but-set-variable]
  vector<double>::iterator out_it_end = out.end();
                           ^~~~~~~~~~
wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)':
wasserstein.cpp:584:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
    while (data_i < datavec.size()) {
           ~~~~~~~^~~~~~~~~~~~~~~~
wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)':
wasserstein.cpp:1088:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
                ~^~~~~~~~~
wasserstein.cpp:1089:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
                ~^~~~~~~~~
wasserstein.cpp: In instantiation of 'double cor(const std::vector<T>&, const std::vector<T>&, double, double) [with T = double]':
wasserstein.cpp:716:49:   required from here
wasserstein.cpp:439:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  for (int i=0; i<x.size(); i++){
wasserstein.cpp: In instantiation of 'std::vector<T> operator-(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:778:44:   required from here
wasserstein.cpp:121:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> cumSum(const std::vector<T>&, int) [with T = double]':
wasserstein.cpp:884:17:   required from here
wasserstein.cpp:472:47: warning: comparison of integer expressions of different signedness: 'const int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  int upper = ((last_index > 0) && (last_index <= x.size())
                                   ~~~~~~~~~~~~^~~~~~~~~~~~
wasserstein.cpp: In instantiation of 'std::vector<T> operator*(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:912:62:   required from here
wasserstein.cpp:101:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> operator+(std::vector<T>, std::vector<T>) [with T = double]':
wasserstein.cpp:933:15:   required from here
wasserstein.cpp:53:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> operator/(const std::vector<T>&, const std::vector<T>&) [with T = double]':
wasserstein.cpp:1046:15:   required from here
wasserstein.cpp:169:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (int i=0; i<x.size(); i++) {
wasserstein.cpp: In instantiation of 'std::vector<T> quantile(const std::vector<T>&, std::vector<double>, int) [with T = double]':
wasserstein.cpp:1162:27:   required from here
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
  T max_x = x_sorted[n-1];
    ^~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/waddR.buildbin-libdir/waddR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'waddR' as waddR_1.8.0.zip
* DONE (waddR)