Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:31 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for treekoR on tokay2


To the developers/maintainers of the treekoR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/treekoR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1996/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
treekoR 1.2.1  (landing page)
Adam Chan
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/treekoR
git_branch: RELEASE_3_14
git_last_commit: 71e2a0a
git_last_commit_date: 2022-02-10 20:36:57 -0400 (Thu, 10 Feb 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: treekoR
Version: 1.2.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/treekoR_1.2.1.tar.gz && rm -rf treekoR.buildbin-libdir && mkdir treekoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treekoR.buildbin-libdir treekoR_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL treekoR_1.2.1.zip && rm treekoR_1.2.1.tar.gz treekoR_1.2.1.zip
StartedAt: 2022-04-12 07:41:36 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:42:34 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 57.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/treekoR_1.2.1.tar.gz && rm -rf treekoR.buildbin-libdir && mkdir treekoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treekoR.buildbin-libdir treekoR_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL treekoR_1.2.1.zip && rm treekoR_1.2.1.tar.gz treekoR_1.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1168k  100 1168k    0     0  2387k      0 --:--:-- --:--:-- --:--:-- 2390k

install for i386

* installing *source* package 'treekoR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'treekoR'
    finding HTML links ... done
    DeBiasi_COVID_CD8_samp                  html  
    addFreqBars                             html  
    addHeatMap                              html  
    addTree                                 html  
    colourTree                              html  
    findChildren                            html  
    geometricMean                           html  
    getCellGMeans                           html  
    getCellProp                             html  
    getClusterTree                          html  
    getParentProp                           html  
    getTotalProp                            html  
    getTreeResults                          html  
    hopachToPhylo                           html  
    plotInteractiveHeatmap                  html  
    plotSigScatter                          html  
    runEdgeRTests                           html  
    runGLMMTests                            html  
    runHOPACH                               html  
    testTree                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'treekoR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'treekoR' as treekoR_1.2.1.zip
* DONE (treekoR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'treekoR' successfully unpacked and MD5 sums checked