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This page was generated on 2022-01-19 13:07:30 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ternarynet on tokay2


To the developers/maintainers of the ternarynet package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ternarynet.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1944/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ternarynet 1.38.0  (landing page)
McCall N. Matthew
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/ternarynet
git_branch: RELEASE_3_14
git_last_commit: a463985
git_last_commit_date: 2021-10-26 12:02:04 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ternarynet
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ternarynet_1.38.0.tar.gz && rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ternarynet.buildbin-libdir ternarynet_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ternarynet_1.38.0.zip && rm ternarynet_1.38.0.tar.gz ternarynet_1.38.0.zip
StartedAt: 2022-01-18 04:16:08 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 04:17:27 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 78.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ternarynet_1.38.0.tar.gz && rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ternarynet.buildbin-libdir ternarynet_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ternarynet_1.38.0.zip && rm ternarynet_1.38.0.tar.gz ternarynet_1.38.0.zip
###
##############################################################################
##############################################################################


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                                 Dload  Upload   Total   Spent    Left  Speed

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100 43109  100 43109    0     0   400k      0 --:--:-- --:--:-- --:--:--  404k

install for i386

* installing *source* package 'ternarynet' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c array.c -o array.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gn.c -o gn.o
gn.c: In function 'score':
gn.c:486: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
gn.c:493: warning: ignoring #pragma omp atomic [-Wunknown-pragmas]
 #pragma omp atomic
 
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gn_Rwrap.c -o gn_Rwrap.o
In file included from C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/R.h:71,
                 from gn_Rwrap.h:4,
                 from gn_Rwrap.c:1:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/R_ext/Arith.h:58:18: warning: 'R_NaReal' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 #define NA_REAL  R_NaReal
                  ^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:643:17: note: in expansion of macro 'NA_REAL'
 R_EXTERN double NA_REAL;
                 ^~~~~~~
In file included from gn_Rwrap.c:9:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:644:17: warning: 'R_PosInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 R_EXTERN double R_PosInf;
                 ^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:645:17: warning: 'R_NegInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 R_EXTERN double R_NegInf;
                 ^~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
         ^~~~~~~~~~~~~~~~
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
                           ^~~~~~~~~
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
                                      ^~~~~~~~~~~
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
     int nOutcomes=3, l0, stage_count, tempi, jtrans, nTransition;
                                       ^~~~~
tnetfit.cc:311:19: warning: 'newScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_VECTOR_ELT(Routput, 10, ScalarReal(newScore));
     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tnetfit.cc:207:25: warning: 'muci_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
      convergence = (muci-muci_old)/sigma0;
                    ~~~~~^~~~~~~~~~
tnetfit.cc:202:36: warning: 'sigmaci' may be used uninitialized in this function [-Wmaybe-uninitialized]
    sigmaci = rho*sigmaRaw + (1-rho)*sigmaci;
                             ~~~~~~~^~~~~~~~
tnetfit.cc:207:18: warning: 'sigma0' may be used uninitialized in this function [-Wmaybe-uninitialized]
      convergence = (muci-muci_old)/sigma0;
      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427:5: warning: unused variable 'tableWidth' [-Wunused-variable]
 int tableWidth = powi(nOutcomes,maxDegree);
     ^~~~~~~~~~
tnetfuncs.cc:435:5: warning: unused variable 'ipause' [-Wunused-variable]
 int ipause;
     ^~~~~~
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517:6: warning: unused variable 'ipause' [-Wunused-variable]
  int ipause;
      ^~~~~~
tnetfuncs.cc:521:16: warning: unused variable 'i' [-Wunused-variable]
    int m1, m2, i;
                ^
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
     int ipause;
         ^~~~~~
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
     int m0fit;
         ^~~~~
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
     double newScore, oldScore, minScore, finalScore;
                                ^~~~~~~~
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
     double newScore, oldScore, minScore, finalScore;
                                          ^~~~~~~~~~
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
         ^~
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
             ^~~~~~~~~~~
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                          ^~~~~
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                                 ^~~~~~
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                                         ^~~~~~~~~~~
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
     int m0, mdelta, xSeedFit;
                     ^~~~~~~~
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
         ^~~~~~~~~~~~~~~~
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
                           ^~~~~~~~~
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
                                      ^~~~~~~~~~~
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
     int maxStage, maxTransition;
         ^~~~~~~~
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
     int maxStage, maxTransition;
                   ^~~~~~~~~~~~~
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
            ^~~~~~~
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                     ^~~~
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                           ^~~~~
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                                  ^~~
In file included from tnetpost.cc:14:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:208:15: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
 #define beta  Rf_beta
               ^~~~~~~
tnetpost.cc:41:9: note: in expansion of macro 'beta'
     int beta;
         ^~~~
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
     int ne, maxDegree;
         ^~
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
     bool minDump = true;
          ^~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c util.c -o util.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ternarynet.dll tmp.def array.o gn.o gn_Rwrap.o init.o tnetfit.o tnetfuncs.o tnetpost.o util.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ternarynet.buildbin-libdir/00LOCK-ternarynet/00new/ternarynet/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ternarynet'
    finding HTML links ... done
    attractorSummary                        html  
    graphPosterior                          html  
    parallelFit                             html  
    plotFit                                 html  
    plotPost                                html  
    plotTraces                              html  
    predictAttractor                        html  
    simulateSteadyState                     html  
    ternaryFit-class                        html  
    ternaryFitParameters-class              html  
    ternaryPost-class                       html  
    tnetfit                                 html  
    tnetpost                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ternarynet' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c array.c -o array.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gn.c -o gn.o
gn.c: In function 'score':
gn.c:486: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
gn.c:493: warning: ignoring #pragma omp atomic [-Wunknown-pragmas]
 #pragma omp atomic
 
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gn_Rwrap.c -o gn_Rwrap.o
In file included from C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/R.h:71,
                 from gn_Rwrap.h:4,
                 from gn_Rwrap.c:1:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/R_ext/Arith.h:58:18: warning: 'R_NaReal' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 #define NA_REAL  R_NaReal
                  ^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:643:17: note: in expansion of macro 'NA_REAL'
 R_EXTERN double NA_REAL;
                 ^~~~~~~
In file included from gn_Rwrap.c:9:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:644:17: warning: 'R_PosInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 R_EXTERN double R_PosInf;
                 ^~~~~~~~
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:645:17: warning: 'R_NegInf' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
 R_EXTERN double R_NegInf;
                 ^~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
         ^~~~~~~~~~~~~~~~
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
                           ^~~~~~~~~
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage, maxStage, maxTransition;
                                      ^~~~~~~~~~~
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
     int nOutcomes=3, l0, stage_count, tempi, jtrans, nTransition;
                                       ^~~~~
tnetfit.cc:311:19: warning: 'newScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
     SET_VECTOR_ELT(Routput, 10, ScalarReal(newScore));
     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tnetfit.cc:207:25: warning: 'muci_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
      convergence = (muci-muci_old)/sigma0;
                    ~~~~~^~~~~~~~~~
tnetfit.cc:202:36: warning: 'sigmaci' may be used uninitialized in this function [-Wmaybe-uninitialized]
    sigmaci = rho*sigmaRaw + (1-rho)*sigmaci;
                             ~~~~~~~^~~~~~~~
tnetfit.cc:207:18: warning: 'sigma0' may be used uninitialized in this function [-Wmaybe-uninitialized]
      convergence = (muci-muci_old)/sigma0;
      ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427:5: warning: unused variable 'tableWidth' [-Wunused-variable]
 int tableWidth = powi(nOutcomes,maxDegree);
     ^~~~~~~~~~
tnetfuncs.cc:435:5: warning: unused variable 'ipause' [-Wunused-variable]
 int ipause;
     ^~~~~~
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517:6: warning: unused variable 'ipause' [-Wunused-variable]
  int ipause;
      ^~~~~~
tnetfuncs.cc:521:16: warning: unused variable 'i' [-Wunused-variable]
    int m1, m2, i;
                ^
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
     int ipause;
         ^~~~~~
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
     int m0fit;
         ^~~~~
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
     double newScore, oldScore, minScore, finalScore;
                                ^~~~~~~~
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
     double newScore, oldScore, minScore, finalScore;
                                          ^~~~~~~~~~
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
         ^~
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
             ^~~~~~~~~~~
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                          ^~~~~
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                                 ^~~~~~
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
     int l0, stage_count, tempi, jtrans, nTransition;
                                         ^~~~~~~~~~~
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
     int m0, mdelta, xSeedFit;
                     ^~~~~~~~
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
         ^~~~~~~~~~~~~~~~
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
                           ^~~~~~~~~
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
     int perturbationType, scoreType, backupStage;
                                      ^~~~~~~~~~~
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
     int maxStage, maxTransition;
         ^~~~~~~~
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
     int maxStage, maxTransition;
                   ^~~~~~~~~~~~~
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
            ^~~~~~~
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                     ^~~~
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                           ^~~~~
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
     double epsilon, chi0, delta, rho;
                                  ^~~
In file included from tnetpost.cc:14:
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rmath.h:208:15: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
 #define beta  Rf_beta
               ^~~~~~~
tnetpost.cc:41:9: note: in expansion of macro 'beta'
     int beta;
         ^~~~
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
     int ne, maxDegree;
         ^~
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
     bool minDump = true;
          ^~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c util.c -o util.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ternarynet.dll tmp.def array.o gn.o gn_Rwrap.o init.o tnetfit.o tnetfuncs.o tnetpost.o util.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ternarynet' as ternarynet_1.38.0.zip
* DONE (ternarynet)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ternarynet' successfully unpacked and MD5 sums checked