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This page was generated on 2022-04-13 12:07:24 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for spiky on tokay2


To the developers/maintainers of the spiky package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spiky.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1859/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spiky 1.0.0  (landing page)
Tim Triche
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/spiky
git_branch: RELEASE_3_14
git_last_commit: 1b25b68
git_last_commit_date: 2021-10-26 13:10:41 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: spiky
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/spiky_1.0.0.tar.gz && rm -rf spiky.buildbin-libdir && mkdir spiky.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spiky.buildbin-libdir spiky_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL spiky_1.0.0.zip && rm spiky_1.0.0.tar.gz spiky_1.0.0.zip
StartedAt: 2022-04-12 06:18:47 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:21:22 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 154.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/spiky_1.0.0.tar.gz && rm -rf spiky.buildbin-libdir && mkdir spiky.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spiky.buildbin-libdir spiky_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL spiky_1.0.0.zip && rm spiky_1.0.0.tar.gz spiky_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  2 4742k    2  101k    0     0   445k      0  0:00:10 --:--:--  0:00:10  444k
 25 4742k   25 1210k    0     0   983k      0  0:00:04  0:00:01  0:00:03  983k
 67 4742k   67 3181k    0     0  1424k      0  0:00:03  0:00:02  0:00:01 1423k
100 4742k  100 4742k    0     0  1697k      0  0:00:02  0:00:02 --:--:-- 1697k

install for i386

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'spiky/inst/extdata/spikes.fa' to 'spiky/inst/extdata/cfMeDIPspikes.fa'
* installing *source* package 'spiky' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spiky'
    finding HTML links ... done
    add_frag_info                           html  
    bam_to_bins                             html  
    bin_pmol                                html  
    covg_to_df                              html  
    dedup                                   html  
    find_spike_contigs                      html  
    genbank_mito                            html  
    generate_spike_fasta                    html  
    get_base_name                           html  
    get_binned_coverage                     html  
    get_merged_gr                           html  
    get_spike_depth                         html  
    get_spiked_coverage                     html  
    kmax                                    html  
    kmers                                   html  
    methylation_specificity                 html  
    model_bam_standards                     html  
    model_glm_pmol                          html  
    parse_spike_UMI                         html  
    phage                                   html  
    predict_pmol                            html  
    process_spikes                          html  
    rename_spike_seqlevels                  html  
    rename_spikes                           html  
    scan_genomic_contigs                    html  
    scan_methylation_specificity            html  
    scan_spike_contigs                      html  
    scan_spike_counts                       html  
    scan_spiked_bam                         html  
    seqinfo_from_header                     html  
    spike                                   html  
    spike_bland_altman_plot                 html  
    spike_counts                            html  
    spike_cram_counts                       html  
    spike_read_counts                       html  
    spiky-methods                           html  
    ssb_res                                 html  
    testGR                                  html  
    tile_bins                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

Warning in untar2(tarfile, files, list, exdir, restore_times) :
  failed to copy 'spiky/inst/extdata/spikes.fa' to 'spiky/inst/extdata/cfMeDIPspikes.fa'
* installing *source* package 'spiky' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spiky' as spiky_1.0.0.zip
* DONE (spiky)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'spiky' successfully unpacked and MD5 sums checked