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This page was generated on 2022-04-13 12:07:24 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for sparseMatrixStats on tokay2


To the developers/maintainers of the sparseMatrixStats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sparseMatrixStats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1841/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sparseMatrixStats 1.6.0  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/sparseMatrixStats
git_branch: RELEASE_3_14
git_last_commit: 78627a8
git_last_commit_date: 2021-10-26 12:58:33 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sparseMatrixStats
Version: 1.6.0
Command: rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.6.0.tar.gz
StartedAt: 2022-04-13 07:10:56 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:12:08 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:   OK  
PackageFile: sparseMatrixStats_1.6.0.zip
PackageFileSize: 1.85 MiB

Command output

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###
### Running command:
###
###   rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.6.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'sparseMatrixStats' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:85:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]':
methods.cpp:30:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:269:32:   required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:277:63:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sparseMatrixStats'
    finding HTML links ... done
    colAlls-xgCMatrix-method                html  
    colAnyNAs-xgCMatrix-method              html  
    colAnys-xgCMatrix-method                html  
    colAvgsPerRowSet-xgCMatrix-method       html  
    colCollapse-xgCMatrix-method            html  
    colCounts-xgCMatrix-method              html  
    colCummaxs-dgCMatrix-method             html  
    colCummins-dgCMatrix-method             html  
    colCumprods-xgCMatrix-method            html  
    colCumsums-xgCMatrix-method             html  
    colDiffs-dgCMatrix-method               html  
    colIQRDiffs-dgCMatrix-method            html  
    colIQRs-xgCMatrix-method                html  
    colLogSumExps-xgCMatrix-method          html  
    colMadDiffs-dgCMatrix-method            html  
    colMads-dgCMatrix-method                html  
    colMaxs-dgCMatrix-method                html  
    colMeans2-xgCMatrix-method              html  
    colMedians-dgCMatrix-method             html  
    colMins-dgCMatrix-method                html  
    colOrderStats-dgCMatrix-method          html  
    colProds-xgCMatrix-method               html  
    colQuantiles-xgCMatrix-method           html  
    colRanges-dgCMatrix-method              html  
    colRanks-dgCMatrix-method               html  
    colSdDiffs-dgCMatrix-method             html  
    colSds-xgCMatrix-method                 html  
    colSums2-xgCMatrix-method               html  
    colTabulates-xgCMatrix-method           html  
    colVarDiffs-dgCMatrix-method            html  
    colVars-xgCMatrix-method                html  
    colWeightedMads-dgCMatrix-method        html  
    colWeightedMeans-xgCMatrix-method       html  
    colWeightedMedians-dgCMatrix-method     html  
    colWeightedSds-xgCMatrix-method         html  
    colWeightedVars-xgCMatrix-method        html  
    xgCMatrix-class                         html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sparseMatrixStats' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:85:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]':
methods.cpp:30:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:269:32:   required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:277:63:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sparseMatrixStats.buildbin-libdir/sparseMatrixStats/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.6.0.zip
* DONE (sparseMatrixStats)