Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:20 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for seqsetvis on tokay2


To the developers/maintainers of the seqsetvis package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqsetvis.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1771/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqsetvis 1.14.4  (landing page)
Joseph R Boyd
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/seqsetvis
git_branch: RELEASE_3_14
git_last_commit: 6b8d904
git_last_commit_date: 2022-04-05 23:46:08 -0400 (Tue, 05 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: seqsetvis
Version: 1.14.4
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/seqsetvis_1.14.4.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.14.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.14.4.zip && rm seqsetvis_1.14.4.tar.gz seqsetvis_1.14.4.zip
StartedAt: 2022-04-12 07:12:20 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:15:20 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 179.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/seqsetvis_1.14.4.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.14.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.14.4.zip && rm seqsetvis_1.14.4.tar.gz seqsetvis_1.14.4.zip
###
##############################################################################
##############################################################################


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100  557k  100  557k    0     0   607k      0 --:--:-- --:--:-- --:--:--  606k
100  557k  100  557k    0     0   606k      0 --:--:-- --:--:-- --:--:--  606k

install for i386

* installing *source* package 'seqsetvis' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqsetvis'
    finding HTML links ... done
    Bcell_peaks                             html  
    CTCF_in_10a_bigWig_urls                 html  
    CTCF_in_10a_data                        html  
    CTCF_in_10a_narrowPeak_grs              html  
    CTCF_in_10a_narrowPeak_urls             html  
    CTCF_in_10a_overlaps_gr                 html  
    CTCF_in_10a_profiles_dt                 html  
    CTCF_in_10a_profiles_gr                 html  
    add_cluster_annotation                  html  
    append_ynorm                            html  
    applySpline                             html  
    assemble_heatmap_cluster_bars           html  
    calc_norm_factors                       html  
    centerAtMax                             html  
    centerFixedSizeGRanges                  html  
    centerGRangesAtMax                      html  
    chromHMM_demo_bw_states_gr              html  
    chromHMM_demo_chain_url                 html  
    chromHMM_demo_data                      html  
    chromHMM_demo_overlaps_gr               html  
    chromHMM_demo_segmentation_url          html  
    chromHMM_demo_state_colors              html  
    chromHMM_demo_state_total_widths        html  
    clusteringKmeans                        html  
    clusteringKmeansNestedHclust            html  
    col2hex                                 html  
    collapse_gr                             html  
    convert_collapsed_coord                 html  
    crossCorrByRle                          html  
    dot-expand_cigar_dt                     html  
    dot-expand_cigar_dt_recursive           html  
    dot-rm_dupes                            html  
    dot-rm_dupesPE                          html  
    easyLoad_FUN                            html  
    easyLoad_IDRmerged                      html  
    easyLoad_bed                            html  
    easyLoad_broadPeak                      html  
    easyLoad_narrowPeak                     html  
    easyLoad_seacr                          html  
    expandCigar                             html  
    fetchBam                                html  
    fragLen_calcStranded                    html  
    fragLen_fromMacs2Xls                    html  
    getReadLength                           html  
    ggellipse                               html  
    harmonize_seqlengths                    html  
    make_clustering_matrix                  html  
    merge_clusters                          html  
    prepare_fetch_GRanges                   html  
    prepare_fetch_GRanges_names             html  
    prepare_fetch_GRanges_width             html  
    quantileGRangesWidth                    html  
    reorder_clusters_hclust                 html  
    reorder_clusters_manual                 html  
    reorder_clusters_stepdown               html  
    reverse_clusters                        html  
    safeBrew                                html  
    seqsetvis-package                       html  
    set_list2memb                           html  
    shift_anchor                            html  
    split_cluster                           html  
    ssvConsensusIntervalSets                html  
    ssvFactorizeMembTable                   html  
    ssvFeatureBars                          html  
    ssvFeatureBinaryHeatmap                 html  
    ssvFeatureEuler                         html  
    ssvFeaturePie                           html  
    ssvFeatureUpset                         html  
    ssvFeatureVenn                          html  
    ssvFetchBam                             html  
    ssvFetchBam.single                      html  
    ssvFetchBamPE                           html  
    ssvFetchBamPE.single                    html  
    ssvFetchBigwig                          html  
    ssvFetchBigwig.single                   html  
    ssvFetchGRanges                         html  
    ssvFetchSignal                          html  
    ssvMakeMembTable-methods                html  
    ssvOverlapIntervalSets                  html  
    ssvSignalBandedQuantiles                html  
    ssvSignalClustering                     html  
    ssvSignalHeatmap.ClusterBars            html  
    ssvSignalHeatmap                        html  
    ssvSignalLineplot                       html  
    ssvSignalLineplotAgg                    html  
    ssvSignalScatterplot                    html  
    ssv_mclapply                            html  
    test_peaks                              html  
    viewGRangesWinSample_dt                 html  
    viewGRangesWinSummary_dt                html  
    within_clust_sort                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqsetvis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqsetvis' as seqsetvis_1.14.4.zip
* DONE (seqsetvis)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'seqsetvis' successfully unpacked and MD5 sums checked