Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:18 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for scater on tokay2


To the developers/maintainers of the scater package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scater.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1710/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scater 1.22.0  (landing page)
Alan O'Callaghan
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/scater
git_branch: RELEASE_3_14
git_last_commit: ea2c95c
git_last_commit_date: 2021-10-26 12:25:30 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: scater
Version: 1.22.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scater_1.22.0.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scater_1.22.0.zip && rm scater_1.22.0.tar.gz scater_1.22.0.zip
StartedAt: 2022-04-12 05:54:17 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:56:28 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 130.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scater_1.22.0.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scater_1.22.0.zip && rm scater_1.22.0.tar.gz scater_1.22.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 17 1065k   17  181k    0     0   403k      0  0:00:02 --:--:--  0:00:02  403k
100 1065k  100 1065k    0     0   785k      0  0:00:01  0:00:01 --:--:--  785k

install for i386

* installing *source* package 'scater' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scater'
    finding HTML links ... done
    SCESet                                  html  
    accessors                               html  
    finding level-2 HTML links ... done

    annotateBMFeatures                      html  
    bootstraps                              html  
    defunct                                 html  
    getExplanatoryPCs                       html  
    getVarianceExplained                    html  
    ggsce                                   html  
    multiplot                               html  
    nexprs                                  html  
    plotColData                             html  
    plotDots                                html  
    plotExplanatoryPCs                      html  
    plotExplanatoryVariables                html  
    plotExpression                          html  
    plotGroupedHeatmap                      html  
    plotHeatmap                             html  
    plotHighestExprs                        html  
    plotPlatePosition                       html  
    plotRLE                                 html  
    plotReducedDim                          html  
    plotRowData                             html  
    plotScater                              html  
    plot_reddim                             html  
    reexports                               html  
    retrieveCellInfo                        html  
    retrieveFeatureInfo                     html  
    runColDataPCA                           html  
    runDiffusionMap                         html  
    runMDS                                  html  
    runMultiUMAP                            html  
    runNMF                                  html  
    runPCA                                  html  
    runTSNE                                 html  
    runUMAP                                 html  
    scater-pkg                              html  
    scater-plot-args                        html  
    toSingleCellExperiment                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scater' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scater' as scater_1.22.0.zip
* DONE (scater)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'scater' successfully unpacked and MD5 sums checked