Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for recount on tokay2


To the developers/maintainers of the recount package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recount.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1565/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
recount 1.20.0  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/recount
git_branch: RELEASE_3_14
git_last_commit: 4ea2090
git_last_commit_date: 2021-11-22 17:30:01 -0400 (Mon, 22 Nov 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: recount
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/recount_1.20.0.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL recount_1.20.0.zip && rm recount_1.20.0.tar.gz recount_1.20.0.zip
StartedAt: 2022-04-12 06:38:29 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:41:00 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 150.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/recount_1.20.0.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL recount_1.20.0.zip && rm recount_1.20.0.tar.gz recount_1.20.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 11 5805k   11  674k    0     0   668k      0  0:00:08  0:00:01  0:00:07  669k
 39 5805k   39 2276k    0     0  1132k      0  0:00:05  0:00:02  0:00:03 1133k
 82 5805k   82 4776k    0     0  1586k      0  0:00:03  0:00:03 --:--:-- 1587k
100 5805k  100 5805k    0     0  1751k      0  0:00:03  0:00:03 --:--:-- 1751k

install for i386

* installing *source* package 'recount' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'recount'
    finding HTML links ... done
    abstract_search                         html  
    add_metadata                            html  
    add_predictions                         html  
    all_metadata                            html  
    browse_study                            html  
    coverage_matrix                         html  
    download_retry                          html  
    download_study                          html  
    expressed_regions                       html  
    find_geo                                html  
    geo_characteristics                     html  
    geo_info                                html  
    getRPKM                                 html  
    getTPM                                  html  
    read_counts                             html  
    recount-package                         html  
    recount_abstract                        html  
    recount_exons                           html  
    recount_genes                           html  
    recount_url                             html  
    reproduce_ranges                        html  
    rse_gene_SRP009615                      html  
    scale_counts                            html  
    snaptron_query                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'recount' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'recount' as recount_1.20.0.zip
* DONE (recount)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'recount' successfully unpacked and MD5 sums checked